View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_low_28 (Length: 251)
Name: NF0664_low_28
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4860749 - 4860959
Alignment:
| Q |
1 |
aactgtaaaattgatgaatgtttaactgtgtaggtggctgaaaaattgagtttgatagaacaacagaaaatggaaatggaaaggcaacaaaaggtacaat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4860749 |
aactgtaaaattgatgaatgtttaaccgtgtaggtggctgaaaaattgagtttgatagaacaacagaaaatggaaatggaaaggcaacaaaaggtacaat |
4860848 |
T |
|
| Q |
101 |
gattaccaattttcacatctcaaatcaataagttctgattttgagttaccatgttttctaactatcacatctcaaatcagtgagccctaatttcgagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| | || || |||| |||||| |
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| T |
4860849 |
gattaccaattttcacatctcaaatcaataagttctgattttgagttaccatgttttccaactttcacatctcgaatcaataagttctgattttgagtta |
4860948 |
T |
|
| Q |
201 |
ccatgtattcc |
211 |
Q |
| |
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|||||| |||| |
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| T |
4860949 |
ccatgttttcc |
4860959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 4861010 - 4861136
Alignment:
| Q |
106 |
ccaattttcacatctcaaatcaataagttctgattttgagttaccatgttttctaactatcacatctcaaatcagtgagccctaatttcgagttaccatg |
205 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4861010 |
ccaactttcacatctcgaatcaataagttctgattttgagttaccatgttttccaactttcacatctcaaatcagtgagccctaatttcgagttacgatg |
4861109 |
T |
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| Q |
206 |
tattcctttatctaaaatgatgatgtc |
232 |
Q |
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|
||||||||||||||||||| ||||||| |
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| T |
4861110 |
tattcctttatctaaaatgttgatgtc |
4861136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 4860906 - 4861011
Alignment:
| Q |
106 |
ccaattttcacatctcaaatcaataagttctgattttgagttaccatgttttctaactatcacatctcaaatcagtgagccctaatttcgagttaccatg |
205 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| | || || |||| ||||||||||| |
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| T |
4860906 |
ccaactttcacatctcgaatcaataagttctgattttgagttaccatgttttccaactttcacatctcgaatcaataagttctgattttgagttaccatg |
4861005 |
T |
|
| Q |
206 |
tattcc |
211 |
Q |
| |
|
| |||| |
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|
| T |
4861006 |
ttttcc |
4861011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 4860958 - 4861063
Alignment:
| Q |
106 |
ccaattttcacatctcaaatcaataagttctgattttgagttaccatgttttctaactatcacatctcaaatcagtgagccctaatttcgagttaccatg |
205 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| | || || |||| ||||||||||| |
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| T |
4860958 |
ccaactttcacatctcgaatcaataagttctgattttgagttaccatgttttccaactttcacatctcgaatcaataagttctgattttgagttaccatg |
4861057 |
T |
|
| Q |
206 |
tattcc |
211 |
Q |
| |
|
| |||| |
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|
| T |
4861058 |
ttttcc |
4861063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 28596629 - 28596694
Alignment:
| Q |
35 |
tggctgaaaaattgagtttgatagaacaacagaaaatggaaatggaaaggcaacaaaaggtacaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||| |
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|
| T |
28596629 |
tggctgaaaaattgagtttgatagaacaacaaaaaatagaaatggaaagacaacaaaagttacaat |
28596694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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