View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_low_3 (Length: 562)
Name: NF0664_low_3
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 79 - 290
Target Start/End: Complemental strand, 13280155 - 13279944
Alignment:
| Q |
79 |
aatattaacttatccacttcaagctgtaaccaataatctcttcctttattcttagttatcttgtagcactctttaaagcttcattttcaaccaattatat |
178 |
Q |
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| T |
13280155 |
aatattaacttatccacttcaaactgtaaccaatactctcttcctttattcttagttatcttgtagcactctttaaagcttcattttcaaccaattatat |
13280056 |
T |
|
| Q |
179 |
tcattgccatattcatatttcaggtaaacacacgccaacaaactgagagaacacttaagaggaacaagcaaagttcttcttccaacacaataactactgc |
278 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13280055 |
tcattgtcatattcatatttcaggtaaacacacgccaacaaactgagagaacacttaagaggaacaagcaaagttcttcttccaacacaataactactgc |
13279956 |
T |
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| Q |
279 |
ttcttcatcatc |
290 |
Q |
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|||||| ||||| |
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| T |
13279955 |
ttcttcttcatc |
13279944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 414 - 551
Target Start/End: Complemental strand, 13279820 - 13279683
Alignment:
| Q |
414 |
gaaatgaaggttggggtggactctacagtggtcttaagccttctcttcttggaactgctgcttctcaggttatctatttcaagttatttttatcttaacc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13279820 |
gaaatgaaggttggggtggactctacagtggtcttaagccttctcttcttggaactgctgcttctcaggttatccatttcaagttatttttatcttaacc |
13279721 |
T |
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| Q |
514 |
aatagttgctttaagctttagcttactattccctctgt |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
13279720 |
aatagttgctttaagctttagcttactattccctctgt |
13279683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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