View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0664_low_34 (Length: 233)
Name: NF0664_low_34
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_34 |
 | |
|
| [»] scaffold0525 (1 HSPs) |
| | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 55292327 - 55292434
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55292327 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
55292426 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
55292427 |
atatgatg |
55292434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10554633 - 10554526
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10554633 |
aggatgtttataatgtttattgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
10554534 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
10554533 |
atatgatg |
10554526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 54973584 - 54973477
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54973584 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
54973485 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
54973484 |
atatgatg |
54973477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 54976194 - 54976087
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54976194 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
54976095 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
54976094 |
atatgatg |
54976087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 54978804 - 54978697
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54978804 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
54978705 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
54978704 |
atatgatg |
54978697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31503797 - 31503688
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31503797 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaatatgttgatatgagtcctacttgttgt |
31503698 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
31503697 |
atatgatgat |
31503688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31506363 - 31506254
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31506363 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaatatgttgatatgagtcctacttgttgt |
31506264 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
31506263 |
atatgatgat |
31506254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21239028 - 21239135
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21239028 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
21239127 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
21239128 |
atatgatg |
21239135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21241578 - 21241685
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21241578 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
21241677 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
21241678 |
atatgatg |
21241685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 20591011 - 20591115
Alignment:
| Q |
4 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgtata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20591011 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatataatatgaaagattttgatatgagtcctacttgttgtata |
20591110 |
T |
|
| Q |
104 |
tgatg |
108 |
Q |
| |
|
||||| |
|
|
| T |
20591111 |
tgatg |
20591115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24504901 - 24504794
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24504901 |
aggatgtttgtaatgtttaatgatgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
24504802 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
24504801 |
atatgatg |
24504794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15686023 - 15686130
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15686023 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggatatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
15686122 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
15686123 |
atatgatg |
15686130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8523130 - 8523023
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8523130 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
8523031 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
8523030 |
atatgatg |
8523023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16278013 - 16278120
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16278013 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgtttatatgagtcctacttgttgt |
16278112 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
16278113 |
atatgatg |
16278120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 53387626 - 53387730
Alignment:
| Q |
4 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgtata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53387626 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatataatatgaaagatgttgatatgagtcctacttgttgtata |
53387725 |
T |
|
| Q |
104 |
tgatg |
108 |
Q |
| |
|
||||| |
|
|
| T |
53387726 |
tgatg |
53387730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41791870 - 41791763
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41791870 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
41791771 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
41791770 |
atatgatg |
41791763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14698914 - 14698806
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14698914 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaa-tgaggggatagttatataatatgaaagatgttgatatgagtcctacttgttgt |
14698816 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
14698815 |
atatgatgat |
14698806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4171222 - 4171114
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
4171222 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaa-tgaggggatagttatataatatgaaaaatgttgatatgagtcctacttgttgt |
4171124 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
4171123 |
atatgatgat |
4171114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 21189768 - 21189819
Alignment:
| Q |
59 |
ttatatattatgaaagatgttgatatgagtcctacttgttgtatatgatgat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
21189768 |
ttatatgttatgaaagatgttgatatcagttatacttgttgtatatgatgat |
21189819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 17505693 - 17505797
Alignment:
| Q |
4 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgtata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17505693 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatataatatgaaagatgttgatatgagtcctacttgttgtata |
17505792 |
T |
|
| Q |
104 |
tgatg |
108 |
Q |
| |
|
||||| |
|
|
| T |
17505793 |
tgatg |
17505797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 17547521 - 17547417
Alignment:
| Q |
4 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgtata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17547521 |
atgtttataatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatataatatgaaagatgttgatatgagtcctacttgttgtata |
17547422 |
T |
|
| Q |
104 |
tgatg |
108 |
Q |
| |
|
||||| |
|
|
| T |
17547421 |
tgatg |
17547417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8776558 - 8776451
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8776558 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttaatatgagtcctactcgttgt |
8776459 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
8776458 |
atatgatg |
8776451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 16006616 - 16006509
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16006616 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagataattatatattatgaaagatgttgatatgagtcctactcgttgt |
16006517 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
16006516 |
atatgatg |
16006509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21743208 - 21743316
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21743208 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaa-tgaggggatagttatataatatgaaagatgttgatatgagtcctacttgttgt |
21743306 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
21743307 |
atatgatgat |
21743316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45134828 - 45134935
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45134828 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
45134927 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
45134928 |
atatgatg |
45134935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7300985 - 7301092
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7300985 |
aggacgtttgtaatgtttaatgacatcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
7301084 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
7301085 |
atatgatg |
7301092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6608177 - 6608285
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6608177 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaacg-aggggatagttatataatatgaaagatgttgatatgagtcctacttgttgt |
6608275 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
6608276 |
atatgatgat |
6608285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21415149 - 21415258
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||| || ||||||| | |||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21415149 |
aggatgtatataatgtttaatgacgtcgatttaagttaataaacaaatgaggagatagttaaatattatgaaagatgttgatatgagttatacttgttgt |
21415248 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
21415249 |
atatgatgat |
21415258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26496084 - 26495977
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
26496084 |
aggatgtttgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgtaagatgttgatatgagtcctactcgttgt |
26495985 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
26495984 |
atatgatg |
26495977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29325143 - 29325250
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29325143 |
aggatgtctgtaatgtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
29325242 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
29325243 |
atatgatg |
29325250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 27869341 - 27869391
Alignment:
| Q |
59 |
ttatatattatgaaagatgttgatatgagtcctacttgttgtatatgatga |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27869341 |
ttatatatcatgaaagatgttgatatgagttacacttgttgtatatgatga |
27869391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9369 - 9262
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9369 |
aggatgttggtaaggtttaatgacgtcgacttaggttgatgaacaaatgaggagatagttatatattatgaaagatgttgatatgagtcctactcgttgt |
9270 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
9269 |
atatgatg |
9262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 20579663 - 20579556
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20579663 |
aggatgtttgtagtgtttaatgacgtcgacttaggtcgatgaacaaatgaggagatagttatatgttatgaaagatgttgatatgagtcctactcgttgt |
20579564 |
T |
|
| Q |
101 |
atatgatg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
20579563 |
atatgatg |
20579556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2052 - 1943
Alignment:
| Q |
1 |
aggatgtttataatgtttaatgacgtcgacttaggttgatgaacaaattacgagatagttatatattatgaaagatgttgatatgagtcctacttgttgt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||| || ||||||| | |||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2052 |
aggatgtatataatgtttaatgacgtcgatttaagttaataaacaaatgaggagatagttaaatattatgaaagatgttgatatgagttatacttgttgt |
1953 |
T |
|
| Q |
101 |
atatgatgat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
1952 |
atatgatgat |
1943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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