View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_low_9 (Length: 350)
Name: NF0664_low_9
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 12347289 - 12346980
Alignment:
| Q |
13 |
gctgttgctcaagagctgctgagaaaagacaacaattgttcaactgttgctgaacatgagttaacttcaatggtaggggaagacctagaaactgtacaag |
112 |
Q |
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| T |
12347289 |
gctgttgctcaagagctgcagagaaaagacaacaattgttcaactgttgctgatcatgagttaacttcaatggtaggggaagacctggaaactgtacaag |
12347190 |
T |
|
| Q |
113 |
atttggtgaaaattcatcgccaatttatgccacataatcgatgtccagcgtgagccagtatgcttgtaattgtaaactcctcgtgacttctaaatttgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12347189 |
atttggtgaaaattcatcgccaatttatgccacataatcgatgtccagcgtgagccagtatgcttgtaattgtaaagtcctcgtgacttctaaatttgat |
12347090 |
T |
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| Q |
213 |
cagaatcatatggttaaaggcaacttaacttaatcatgagttgttttatcttgccacttttcattccttgcttgattggtttatccagatattctttttt |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12347089 |
cagaatcatatggttaaaggcgacttaacttaatcatgagttgttttatcttgccacttttcattccttgcttgattggtttatccagatattctttttt |
12346990 |
T |
|
| Q |
313 |
aggtataatt |
322 |
Q |
| |
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|||||||||| |
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| T |
12346989 |
aggtataatt |
12346980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 12338782 - 12338613
Alignment:
| Q |
13 |
gctgttgctcaagagctgctgagaaaagacaacaattgttcaactgttgctgaacatgagttaacttcaatggtaggggaagacctagaaactgtacaag |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
12338782 |
gctgttgctcaagagctgcagagaaaagacaacaattgttcaactgttgcggaacttgagttaacttcaatggtaggagaagacctagaaactgtaaaag |
12338683 |
T |
|
| Q |
113 |
atttggtgaaaattcatcgccaatttatgccacataatcgatgtccagcgtgag-ccagtatgcttgtaa |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
12338682 |
atttggtgaaaattcatcgccaatttatgccacataatcgatgtccagtgtgagaacagtatgcttgtaa |
12338613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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