View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0665-Insertion-1 (Length: 1000)
Name: NF0665-Insertion-1
Description: NF0665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0665-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 6 - 665
Target Start/End: Original strand, 11545632 - 11546289
Alignment:
| Q |
6 |
catttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgt |
105 |
Q |
| |
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| T |
11545632 |
catttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgt |
11545731 |
T |
|
| Q |
106 |
ggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgt--agttgtt |
203 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11545732 |
ggaagatattactgatatcaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtgtagttgtt |
11545831 |
T |
|
| Q |
204 |
cattttgttgcttaagcaaacaaaataaatcaacgcttttctttgtattatgttataattaagtttgcttgacattttaaatcgtataataatacatgac |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11545832 |
cattttgttgcttaagcaaacaaaataaatcaatgcttttctttgtattatgttataa----gtttgcttgacattttaaatcgtataataatacatgac |
11545927 |
T |
|
| Q |
304 |
tttggtcttttttctatgaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttattgctcaaaaagttagagctgttaattt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545928 |
tttggtcttttttctatgaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttattgctcaaaaagttagagctgttaattt |
11546027 |
T |
|
| Q |
404 |
ggttcaagagaatttccttgattgtgggagcatttgagggttccatttccagataaaggctacattcgatgtaatcgtggaaatggaagatttcaaatga |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11546028 |
ggttcaagagaatttccttgattgtgggagcatttgagagttccatttccagataaaggctacattcgatgtaatcgtggaaatggaagatttcaaatga |
11546127 |
T |
|
| Q |
504 |
atactagtattgttgaatctgatctggtgtctagctagcataccagattgcttataacgtgaattggtgtaataacaattgtccttcgactcattttatt |
603 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11546128 |
atacaagtattgttgaatctgatctggtgtctagctagcataccagattgcttataacgtgaattggtgtaataacaattgtccttcgactcatttaatt |
11546227 |
T |
|
| Q |
604 |
ttaaaactttctaggtagaggaaagattaaaactcagaaaaagtgagcgtaatacagaaatg |
665 |
Q |
| |
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| T |
11546228 |
ttaaaactttctaggtagaggaaagattaaaactcagaaaaagtgagcgtaatacagaaatg |
11546289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 671 - 874
Target Start/End: Original strand, 11546397 - 11546599
Alignment:
| Q |
671 |
tccctgccatatagcatgactcgttttatatttgaaaaatgagagtttggaattagtgatgtgtaagtatgaattctatgaactatctttgtgttgttct |
770 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11546397 |
tccctgccatatagcatgactcgttttatatttgaaaaatgagagtttggaattagtgatgcgtaagtatgaattctatgaactatctttgtgttgttct |
11546496 |
T |
|
| Q |
771 |
atttccttgtgaatcgttaagctaaatgtgaaggaagcaaacctttttaannnnnnnnnnncttcggatat-aatttattcattatagtgaatatatagt |
869 |
Q |
| |
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| T |
11546497 |
atttccttgtgaatcgttaagctaaatgtgaaggaagcaaacctttttaa--tttttttgtcttcggatataaatttattcattatagtgaatatatagt |
11546594 |
T |
|
| Q |
870 |
aaata |
874 |
Q |
| |
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||||| |
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| T |
11546595 |
aaata |
11546599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 11559141 - 11559292
Alignment:
| Q |
85 |
aattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaa |
184 |
Q |
| |
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||||| |||||||||||||||||| | ||| |||||| |||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11559141 |
aattggccaagtgcttaatgtggattctcttaatgatatcaacagtcaattggcatctactattctaaatgtgaaggatgctcttatgagttctatttaa |
11559240 |
T |
|
| Q |
185 |
caatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11559241 |
caatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
11559292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 263 - 412
Target Start/End: Original strand, 11559350 - 11559493
Alignment:
| Q |
263 |
taagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatcta-ttctatgttattgttatcagtta |
361 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||| |
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| T |
11559350 |
taagtttgcttgacattttaaatcttataataatacatgactttggtcttttctctatgaatgatgaattgatctatttcta------tgttttcagtta |
11559443 |
T |
|
| Q |
362 |
aagctgttaatttattgctcaaaaagttagagctgttaatttggttcaaga |
412 |
Q |
| |
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|||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11559444 |
gagctattgatttattg-tcaaaaagttagagcagttaatttggttcaaga |
11559493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 878 - 979
Target Start/End: Original strand, 11546671 - 11546776
Alignment:
| Q |
878 |
gcactcctccataataagaataaagagtttatt-ccctaattttgggttatatttatgattcctagt--gttgaggctgacatcta-tctaaat-gtaac |
972 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| || |||||||| |||||||| ||||||| ||||| |
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| T |
11546671 |
gcactcctccataataagaataaagagtttattcccctaattttggttaatatttatgattcctggttggttgaggc-gacatctattctaaatagtaac |
11546769 |
T |
|
| Q |
973 |
atgggaa |
979 |
Q |
| |
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||||||| |
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| T |
11546770 |
atgggaa |
11546776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 20915697 - 20915470
Alignment:
| Q |
7 |
atttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtg |
106 |
Q |
| |
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||||| ||| |||||||||| | ||||||||| |||||||| |||||| |||||||| |||| |||| |||| ||| ||||||||||||| ||||| || |
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| T |
20915697 |
atttgaagcatctaacaataattgagatggctcattgttaactttggcatcccaaattatgagtactaatccatatgcaattgaccaagtggttaatttg |
20915598 |
T |
|
| Q |
107 |
gaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtagttgttcat |
206 |
Q |
| |
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|| || |||||||||| ||||| || ||||||||||||||||| | ||| |||||||| || |||||| |||||||||||||||| ||||||||||| |
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| T |
20915597 |
gattatgttactgatatcaacacccaattggcaactactattctgcaagtg-aggatgcttttttgagctatatttaacaatttgga-atagttgttcat |
20915500 |
T |
|
| Q |
207 |
tttgttgcttaagcaaacaaaataaatcaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
20915499 |
tttgttgcttaagcaaacaaaataaatcaa |
20915470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 20916399 - 20916589
Alignment:
| Q |
3 |
caacatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaa |
102 |
Q |
| |
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||||||||| ||| ||||||| ||||| ||||||||| |||||||| |||||| |||||||| ||| ||||||||| ||| ||||||| |||||||||| |
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| T |
20916399 |
caacatttgaagcatctaacagtattggagatggctcattgttaactttggcatcccaaatttcgagtactagtccatatgcaattgactaagtgcttaa |
20916498 |
T |
|
| Q |
103 |
tgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttgga |
193 |
Q |
| |
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| | || || |||||||||| ||||| || ||||||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||| |
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| T |
20916499 |
ttttgattatgttactgatatgaacacccaattggcaactactattctgcaagtgaaggatgctctcatgagctatatttaacagtttgga |
20916589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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