View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0665-Insertion-4 (Length: 156)
Name: NF0665-Insertion-4
Description: NF0665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0665-Insertion-4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 4e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 202737 - 202853
Alignment:
| Q |
40 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggatta |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
202737 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaaagttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggatta |
202836 |
T |
|
| Q |
140 |
atggagactttatcatt |
156 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
202837 |
atggagactttatcatt |
202853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 8e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 6908223 - 6908125
Alignment:
| Q |
58 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggattaatggagactttatcatt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6908223 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggattaatggagactttatcatt |
6908125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 6908253 - 6908225
Alignment:
| Q |
40 |
ttgattctaaattaaggaaggaaatatgt |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6908253 |
ttgattctaaattaaggaaggaaatatgt |
6908225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 406 times since January 2019
Visitors: 4084