View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0665-Insertion-7 (Length: 256)

Name: NF0665-Insertion-7
Description: NF0665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0665-Insertion-7
NF0665-Insertion-7
[»] chr8 (5 HSPs)
chr8 (71-255)||(41015105-41015289)
chr8 (58-185)||(1605267-1605393)
chr8 (60-195)||(11142697-11142831)
chr8 (66-195)||(1662526-1662654)
chr8 (7-67)||(41014443-41014503)
[»] chr1 (7 HSPs)
chr1 (60-184)||(4328782-4328906)
chr1 (59-195)||(35161947-35162082)
chr1 (66-195)||(29395391-29395519)
chr1 (66-195)||(30410795-30410923)
chr1 (58-141)||(41866976-41867059)
chr1 (66-141)||(28549359-28549434)
chr1 (60-140)||(37179718-37179797)
[»] chr3 (5 HSPs)
chr3 (66-195)||(4865120-4865248)
chr3 (64-195)||(55041454-55041584)
chr3 (66-161)||(30766014-30766108)
chr3 (74-141)||(23217047-23217113)
chr3 (65-97)||(46595821-46595853)
[»] chr7 (4 HSPs)
chr7 (66-185)||(13946647-13946765)
chr7 (70-195)||(34575602-34575725)
chr7 (74-141)||(33865605-33865671)
chr7 (60-186)||(20389908-20390033)
[»] chr2 (1 HSPs)
chr2 (66-195)||(17830842-17830969)
[»] chr4 (3 HSPs)
chr4 (64-141)||(34703765-34703842)
chr4 (69-141)||(43046273-43046345)
chr4 (59-95)||(7131295-7131331)
[»] chr6 (6 HSPs)
chr6 (60-140)||(6309166-6309246)
chr6 (74-141)||(11074870-11074936)
chr6 (69-195)||(32444477-32444602)
chr6 (60-97)||(31112468-31112505)
chr6 (69-195)||(11178361-11178486)
chr6 (65-97)||(4434986-4435018)
[»] scaffold0524 (1 HSPs)
scaffold0524 (60-95)||(5126-5161)
[»] chr5 (1 HSPs)
chr5 (64-97)||(37720060-37720093)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 71 - 255
Target Start/End: Original strand, 41015105 - 41015289
Alignment:
Q  71 tattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015105 tattatctaatcctaaagtacaatgcacataactatttcaaaactctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 41015204  T
Q  171 tttgaatttcaaatccagtacccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaaga 255  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015205 tttgagtttcaaatccagtacccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaaga 41015289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 1605393 - 1605267
Alignment:
Q  58 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccac 157  Q
    ||||||||||| |||||||||||||||||| ||| ||||| | || ||||  |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1605393 aaatccttatcattattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgatttagagcgggaaaattatgca-ttaaccac 1605295  T
Q  158 atttaatgccatttttgaatttcaaatc 185  Q
    | |||||| |||||||||||||||||||    
T  1605294 acttaatgacatttttgaatttcaaatc 1605267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 11142697 - 11142831
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||| |||  || |||||||||||||||  | ||||||||||    
T  11142697 atccttatccttattatctaatcctaaactacaatgcacataacaattgcaaaaccctaatcattggctttgagcgggaaaattgt-tatttaaccacat 11142795  T
Q  160 ttaatgccatttttgaatttcaaatccagtaccctt 195  Q
    |||||| |||||||||||||||||||  ||||||||    
T  11142796 ttaatggcatttttgaatttcaaatcatgtaccctt 11142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 1662654 - 1662526
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatcctt-gatttagagcgggaaaattgtgcacttaaccacatttaat 164  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||    
T  1662654 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttagattt-gagcgggaaaattgtg-atttaaccatatttaat 1662557  T
Q  165 gccatttttgaatttcaaatccagtaccctt 195  Q
    | |||||||||||||||||||  ||||||||    
T  1662556 gtcatttttgaatttcaaatcatgtaccctt 1662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 41014443 - 41014503
Alignment:
Q  7 acacagtgtaaccctctttcaaatatccaactgtcaaaaccaagggataacaaatccttat 67  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  41014443 acacactgtaaccctctttcaaatatccacctgacaaaaccaagggataacaaatccttat 41014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 4328906 - 4328782
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 159  Q
    |||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4328906 atccttatccttattatctaatcctaaagtacaatgcacacaactttttcaaaaccctaatccttggttttgagcgggaaaattgtgcacttaaccacat 4328807  T
Q  160 ttaatgccatttttgaatttcaaat 184  Q
    ||||||| | |||||||||||||||    
T  4328806 ttaatgctaattttgaatttcaaat 4328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 35161947 - 35162082
Alignment:
Q  59 aatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccaca 158  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || ||||||||||||| || | ||||||| |    
T  35161947 aatccttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaattatg-atttaaccaaa 35162045  T
Q  159 tttaatgccatttttgaatttcaaatccagtaccctt 195  Q
    ||||||| |||||||||||||||||||  ||||||||    
T  35162046 tttaatggcatttttgaatttcaaatcatgtaccctt 35162082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 29395519 - 29395391
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 165  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||| |||  || |||||||||||||||| | ||||||||||||||||    
T  29395519 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtg-atttaaccacatttaatg 29395421  T
Q  166 ccatttttgaatttcaaatccagtaccctt 195  Q
     |||||||||||||||||||  ||||||||    
T  29395420 acatttttgaatttcaaatcatgtaccctt 29395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 30410923 - 30410795
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 165  Q
    |||||||||||||||| ||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||||    
T  30410923 atccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaatg 30410825  T
Q  166 ccatttttgaatttcaaatccagtaccctt 195  Q
     |||||||||||||||||||  ||||||||    
T  30410824 gcatttttgaatttcaaatcatgtaccctt 30410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 41866976 - 41867059
Alignment:
Q  58 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  41866976 aaatccttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 41867059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 28549434 - 28549359
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    ||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  28549434 atccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 28549359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 37179718 - 37179797
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaa 140  Q
    |||||||||||||||||||||||||||  ||||||| | | || || | |||||||||||| ||| | || ||||||||||    
T  37179718 atccttatccttattatctaatcctaacctacaatgtaaacaaata-tgcaaaaccctaattctttagtttgagcgggaaa 37179797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 4865120 - 4865248
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 165  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  4865120 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 4865218  T
Q  166 ccatttttgaatttcaaatccagtaccctt 195  Q
     |||||||||||||||||||  ||||||||    
T  4865219 gcatttttgaatttcaaatcatgtaccctt 4865248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 55041584 - 55041454
Alignment:
Q  64 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaa 163  Q
    |||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||    
T  55041584 ttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaa 55041486  T
Q  164 tgccatttttgaatttcaaatccagtaccctt 195  Q
    || |||||||||||||||||||  ||||||||    
T  55041485 tggcatttttgaatttcaaatcatgtaccctt 55041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 30766108 - 30766014
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacattt 161  Q
    |||||||||||||||||||||| ||||||||||| || |  |  ||||||||||||  |||||||||||||||||||| ||| |||||| ||||||    
T  30766108 atccttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatctatgatttagagcgggaaaattttgc-cttaactacattt 30766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 23217113 - 23217047
Alignment:
Q  74 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    |||| |||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  23217113 tatccaatcctaatgtacaatgcacagaag-acctaaaaaccctaatccttgatttagagcgggaaaa 23217047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 46595853 - 46595821
Alignment:
Q  65 tatccttattatctaatcctaaagtacaatgca 97  Q
    ||||||||||||||||||||||| |||||||||    
T  46595853 tatccttattatctaatcctaaactacaatgca 46595821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 13946647 - 13946765
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 165  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  13946647 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 13946745  T
Q  166 ccatttttgaatttcaaatc 185  Q
      ||||||||||||||||||    
T  13946746 ggatttttgaatttcaaatc 13946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 34575602 - 34575725
Alignment:
Q  70 ttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccat 169  Q
    |||||||||||||||||  ||||||||||| ||   || |||||||||||||||||  || ||||||||||| |||| | | |||||||||||||  |||    
T  34575602 ttattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtg-attaaaccacatttaattgcat 34575699  T
Q  170 ttttgaatttcaaatccagtaccctt 195  Q
    ||||||||||||||||| ||||||||    
T  34575700 ttttgaatttcaaatcctgtaccctt 34575725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 33865605 - 33865671
Alignment:
Q  74 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    ||||||||||||| |||||||||||| ||| |  | |||||||||||| |||||||||||||||||||    
T  33865605 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatctttgatttagagcgggaaaa 33865671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 20389908 - 20390033
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 159  Q
    |||||||||||||||||||||||||||| ||||||||| | ||    |  ||||||||||||||   ||| ||||||||||||| |||   | ||| ||     
T  20389908 atccttatccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaat-acctcac 20390006  T
Q  160 ttaatgccatttttgaatttcaaatcc 186  Q
    |||||||||||||  ||||||||||||    
T  20390007 ttaatgccattttcaaatttcaaatcc 20390033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 17830842 - 17830969
Alignment:
Q  66 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 165  Q
    ||||||||||||||||| |||  ||||||||||| ||   || |||||||||||||||||  || ||||||||||| |||| | ||||||| |||||||     
T  17830842 atccttattatctaatcataacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtg-atttaaccatatttaatt 17830939  T
Q  166 ccatttttgaatttcaaatccagtaccctt 195  Q
     ||||||||||||||||||||  |||||||    
T  17830940 gcatttttgaatttcaaatcctataccctt 17830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 34703765 - 34703842
Alignment:
Q  64 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    ||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  34703765 ttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 34703842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 43046345 - 43046273
Alignment:
Q  69 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    |||||||| ||||||||| |||||||| | | ||| ||||||||||||||| ||| ||||| |||||| ||||    
T  43046345 cttattatttaatcctaatgtacaatgtaaacaagcatttcaaaaccctaaacctagattttgagcggaaaaa 43046273  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 7131295 - 7131331
Alignment:
Q  59 aatccttatccttattatctaatcctaaagtacaatg 95  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7131295 aatccttatccttattacctaatcctaaactacaatg 7131331  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 6309246 - 6309166
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaa 140  Q
    ||||||||||||||||||||||||||| |||||||| | | |||  |||||||||| ||| ||| ||||| ||||||||||    
T  6309246 atccttatccttattatctaatcctaatgtacaatgtaaacaagcctttcaaaaccttaaacctagattttgagcgggaaa 6309166  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 11074870 - 11074936
Alignment:
Q  74 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 141  Q
    ||||||||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  11074870 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatccttgatttagagcgggaaaa 11074936  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 32444477 - 32444602
Alignment:
Q  69 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgcca 168  Q
    ||||||||||||||||||| ||||||||| | ||    || ||||||||||||||   ||| |||||||||| |  |||  |||||| || |||||||||    
T  32444477 cttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatcctaagttttgagcgggaaactaatgct-ttaacctcacttaatgcca 32444575  T
Q  169 tttttgaatttcaaatccagtaccctt 195  Q
    |||||||||||||||||| ||| ||||    
T  32444576 tttttgaatttcaaatcctgtatcctt 32444602  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 31112505 - 31112468
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatgca 97  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31112505 atccttatccttattatcgaatcctaaagtacaatgca 31112468  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 11178361 - 11178486
Alignment:
Q  69 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgcca 168  Q
    ||||||||||||||||||| ||||||||| | ||    |  ||||||||||||||   ||| ||| |||||| |  |||  |||||| || |||||||||    
T  11178361 cttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatgttttgagtgggaaactaatgct-ttaacctcacttaatgcca 11178459  T
Q  169 tttttgaatttcaaatccagtaccctt 195  Q
    |||||||||||||||||  ||||||||    
T  11178460 tttttgaatttcaaatcatgtaccctt 11178486  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 4434986 - 4435018
Alignment:
Q  65 tatccttattatctaatcctaaagtacaatgca 97  Q
    ||||||||||||||||||||||| |||||||||    
T  4434986 tatccttattatctaatcctaaactacaatgca 4435018  T

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Target: scaffold0524 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 5126 - 5161
Alignment:
Q  60 atccttatccttattatctaatcctaaagtacaatg 95  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5126 atccttatccttattatctaatcctaatgtacaatg 5161  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 37720093 - 37720060
Alignment:
Q  64 ttatccttattatctaatcctaaagtacaatgca 97  Q
    |||||||||||||||||||||||| |||||||||    
T  37720093 ttatccttattatctaatcctaaactacaatgca 37720060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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