View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0665-Insertion-8 (Length: 811)
Name: NF0665-Insertion-8
Description: NF0665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0665-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 7 - 784
Target Start/End: Original strand, 49461072 - 49461877
Alignment:
| Q |
7 |
ataaagtttaataagggatctacccgaccttataaaagtcctacatgcttcttacattttaagataacctctaaatctggaaggggaaaaaacctggaac |
106 |
Q |
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| T |
49461072 |
ataaagtttaataagggatctacccgaccttataaaagtcctacatgtttcttacatttcaagataacctctaaatctggaaggggaaaaaacctggaac |
49461171 |
T |
|
| Q |
107 |
ctgcatctcactccaaccgtccct-----------gagtgctcatgtgctatctcagataggtagagaagattattctcacaaaaatgtttggtaagttg |
195 |
Q |
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| T |
49461172 |
ctgcatctcactccaaccgtccctaaatctgagaagagtgctcatgtgctatctcagataagtagagaagattattctcacaaaaatgtttggtaagttg |
49461271 |
T |
|
| Q |
196 |
ttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgcccagaatctataatcatgc |
295 |
Q |
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| T |
49461272 |
ttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgcccagaatctataatcatgc |
49461371 |
T |
|
| Q |
296 |
atgagctccggattttcaaataaagatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaaacaaaataaagacaaactg |
395 |
Q |
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| T |
49461372 |
atgagctctggattttcaaataaaaatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaaacaaaataaagacaaactg |
49461471 |
T |
|
| Q |
396 |
caacagttgtataacaatctacaagtagatttggcatcgcatgcaactatcacaa--ttctttttgtagataaatggaatgacaataaccaatggaaaac |
493 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |
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| T |
49461472 |
caacagttgtataacattctacaagtagatttggcatcaaatgcaactatcacaattttttttttgtagataaatggaatgacaataaccaattgaaaac |
49461571 |
T |
|
| Q |
494 |
tcaaacaaatgaggga---------------tgggttacggtatccagtctaacaatttcaacatttgctagttgaactatgacttgggaacacaccgat |
578 |
Q |
| |
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||| |||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461572 |
tcagacaactgagggatcccatgtttgaacctgagtcacggtatccagtctaacaatttcaacatttgctagttgaactatgacttgggaacacaccgat |
49461671 |
T |
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| Q |
579 |
catatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacatgaaccaagaaactcagacctctacatacct |
678 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461672 |
catattttcatacaagccattgatctttcaatcattacaattttctttacaaatttagagaattttacatgaaccaagaaactcagacctctacatacct |
49461771 |
T |
|
| Q |
679 |
tcttcccacatagaatgacaactatgctaaaacacaataaatcttgttgaaactgctgaaaccttcatatcaagttgattatggcaagtatataactata |
778 |
Q |
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| T |
49461772 |
tcttcccacatagaatgacaactatgctaaaacacaacaaatcttgttgaaactgctgaaaccttcatatcaagttgattatggcaagtatataactata |
49461871 |
T |
|
| Q |
779 |
acagga |
784 |
Q |
| |
|
|||||| |
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|
| T |
49461872 |
acagga |
49461877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 549 - 781
Target Start/End: Original strand, 42175728 - 42175963
Alignment:
| Q |
549 |
agttgaactatgacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacat |
648 |
Q |
| |
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|||||||||| || ||| ||| || |||||| ||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
42175728 |
agttgaactaggatttgtgaaagcaacgatcacatttttatataagttcttgatttttcaatcattacaattttcttt--aaatttagagaattttacaa |
42175825 |
T |
|
| Q |
649 |
gaaccaagaaactcagacctctacataccttcttcccacatagaatgacaactatgctaa--aacacaataaatcttgttgaaactgctga----aacct |
742 |
Q |
| |
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||| | ||||| | || || ||||||||||||||||||||||| | ||||||| |||| ||| || || ||||| ||||||||| || ||||| |
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| T |
42175826 |
aaacgaggaaaccccga-ctttacataccttcttcccacatagagcgccaactatactaattcacagaacaagtcttgctgaaactgcggaacagaacct |
42175924 |
T |
|
| Q |
743 |
tcatatcaagttgattatggcaagtatataactataaca |
781 |
Q |
| |
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|||||||||||| ||||||| ||||| ||||| ||||| |
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| T |
42175925 |
gcatatcaagttgtttatggctagtatctaactctaaca |
42175963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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