View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0665_low_10 (Length: 252)
Name: NF0665_low_10
Description: NF0665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0665_low_10 |
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| [»] scaffold0073 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0073 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 39302 - 39074
Alignment:
| Q |
24 |
catcaagttgatttagttacttccataggtattctagatgaaatttttaccataatggtattaaagctgaggtttatcattttagacaagttgtgatgaa |
123 |
Q |
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| T |
39302 |
catcaagttgatttagttacttccataggtattctagatgaaatttttaccataatggtattaaagctgaggtttatcattttagacaagttgtgatgaa |
39203 |
T |
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| Q |
124 |
tttaatctacttgaataacaacttctcaatcaataattttttgtataattgaaattgttcaccgttcttttagacaagttataagtttcaagactttata |
223 |
Q |
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| T |
39202 |
tttaatctacttgaataacaacttctcaatcaataattttttgtataattgaaattgttcactgttcttttagacaagttataagtttcaagactttata |
39103 |
T |
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| Q |
224 |
tttacatgattccacttatatgccaatgt |
252 |
Q |
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| T |
39102 |
tttacatgattccacttataggccaatgt |
39074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 37482945 - 37483173
Alignment:
| Q |
24 |
catcaagttgatttagttacttccataggtattctagatgaaatttttaccataatggtattaaagctgaggtttatcattttagacaagttgtgatgaa |
123 |
Q |
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| T |
37482945 |
catcaagttgatttagttacttccataggtattctagatgaaatttttaccataatggtattaaagctgaggtttatcattttagacaagttgtgatgaa |
37483044 |
T |
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| Q |
124 |
tttaatctacttgaataacaacttctcaatcaataattttttgtataattgaaattgttcaccgttcttttagacaagttataagtttcaagactttata |
223 |
Q |
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| T |
37483045 |
tttaatctacttgaataacaacttctcaatccataattttttgtataattgaaattgttcactgttcttttagacaagttataagtttcaagactttata |
37483144 |
T |
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| Q |
224 |
tttacatgattccacttatatgccaatgt |
252 |
Q |
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| T |
37483145 |
tttacatgattccacttataggccaatgt |
37483173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 16414346 - 16414407
Alignment:
| Q |
191 |
ttttagacaagttataagtttcaagactttatatttacatgattccacttatatgccaatgt |
252 |
Q |
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| T |
16414346 |
ttttagccaagttttaggtttcaagactttatatttacatgattccacttatagaccaatgt |
16414407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 3396034 - 3396095
Alignment:
| Q |
191 |
ttttagacaagttataagtttcaagactttatatttacatgattccacttatatgccaatgt |
252 |
Q |
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|||||| |||||| || |||| ||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3396034 |
ttttagccaagttttaggttttaagacttcatatttacatgattccacttataggccaatgt |
3396095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 24224395 - 24224334
Alignment:
| Q |
191 |
ttttagacaagttataagtttcaagactttatatttacatgattccacttatatgccaatgt |
252 |
Q |
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| T |
24224395 |
ttttagccaagttttaggtttcaagactttatatttacatgattccacttataagccaatgt |
24224334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 3058 - 3119
Alignment:
| Q |
191 |
ttttagacaagttataagtttcaagactttatatttacatgattccacttatatgccaatgt |
252 |
Q |
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|||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3058 |
ttttagccaagttttaggtttcaagactttatatttacatgattccacttatagaccaatgt |
3119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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