View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_high_4 (Length: 450)
Name: NF0666_high_4
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 36381264 - 36380853
Alignment:
| Q |
30 |
taaaagtcatttaaaactgtttcacctcactgtgggtttacaagggaaaaaaggcaaggaacaaaacttattcaagaaaaacaagaggcaagcatagttg |
129 |
Q |
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| T |
36381264 |
taaaagtcatttaaaactgtttcacctcactgtgggtttacaagggaaaaaaggcaaggaacaaaacttattcaaaaaaaacaaaaggcaagcatagttg |
36381165 |
T |
|
| Q |
130 |
gaggattaaaacctaacaaaagttgcagcccattcttgtgatgtgtgagttgtcacatgcttgaaattaaactgatgccgtttttccctttcatcagctg |
229 |
Q |
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| T |
36381164 |
gaggattaaaacctaacaaaagttgcagcccattcttgtgacgtgtgagttgtcacatgcttgaaattaaactgatgccgtttttccctttcatcagctg |
36381065 |
T |
|
| Q |
230 |
gcatgtccaaagcataaccaatagaagcagcaacctctgtgatattccatggatttaccaagatagcaccagcaccaagagactgcgctgcacctgcaaa |
329 |
Q |
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| T |
36381064 |
gcatgtccaaagcataaccaatagaagcagcaacctctgtgatattccatggatttaccaagatagcaccagcaccaagagactgcgctgcacctgcaaa |
36380965 |
T |
|
| Q |
330 |
ctgatgacatttaaatagttcaatatttttgaatctcaaccaccaagtaatttttataataatataattggagatatcaaaatttagttatcttttttaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36380964 |
ctgatgacatttaaatagttcaatatttttgaatctcaaccaccaagtaatttttataataatataattggagatatcaaaatttagttatcttttttaa |
36380865 |
T |
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| Q |
430 |
aacaatattatt |
441 |
Q |
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| T |
36380864 |
aacaatattatt |
36380853 |
T |
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