View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_low_1 (Length: 766)
Name: NF0666_low_1
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 386 - 756
Target Start/End: Complemental strand, 39304771 - 39304401
Alignment:
| Q |
386 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304771 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
39304672 |
T |
|
| Q |
486 |
aatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
585 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304671 |
aatatcatcaccgttgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
39304572 |
T |
|
| Q |
586 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304571 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
39304472 |
T |
|
| Q |
686 |
tgctattgtgatgatgattatgattattgttgttgattgtttttaaacaatgagtttcagggttttctgtg |
756 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304471 |
tgctattgtgatgatgattatgattattgttgttgattgtttttaaacaatgagtttcagggttttctgtg |
39304401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 323
Target Start/End: Complemental strand, 39305031 - 39304828
Alignment:
| Q |
120 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgcggtcgtaattgtttttgaatcgaatttggagag |
219 |
Q |
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| T |
39305031 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgctgtcgtaattgtttttgaatcgaatttggagag |
39304932 |
T |
|
| Q |
220 |
aaaggaagtggaaatggttgatcagtagtcatataaggaggttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304931 |
aaaggaagtggaaatggttgatcagtagtcatataaggagtttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaatt |
39304832 |
T |
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| Q |
320 |
catc |
323 |
Q |
| |
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|||| |
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| T |
39304831 |
catc |
39304828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 469 - 625
Target Start/End: Complemental strand, 38281774 - 38281618
Alignment:
| Q |
469 |
gttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccg |
568 |
Q |
| |
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||||| |||||||||| || |||||||||||| ||||| || ||||||||||| ||||| ||||| || ||||| || || | ||||| |||||||| | |
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| T |
38281774 |
gttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcag |
38281675 |
T |
|
| Q |
569 |
acacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaa |
625 |
Q |
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|
| T |
38281674 |
agacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa |
38281618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 44105545 - 44105492
Alignment:
| Q |
629 |
cttttttcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
683 |
Q |
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| T |
44105545 |
cttttttcatgattctacccacattggctatagga-gaaaacgatcttgttcttt |
44105492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 578
Target Start/End: Complemental strand, 41866750 - 41866626
Alignment:
| Q |
454 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
553 |
Q |
| |
|
|||||||| |||||||| || || ||||||| | ||| || || ||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
41866750 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
41866651 |
T |
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| Q |
554 |
aacttatgaactccgacacacattc |
578 |
Q |
| |
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| || ||||||||||| |||||||| |
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| T |
41866650 |
agctgatgaactccgatacacattc |
41866626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 683
Target Start/End: Original strand, 39786371 - 39786519
Alignment:
| Q |
535 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
634 |
Q |
| |
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|||||||| || || |||||||| | ||||| || ||||| ||||| | || ||||| ||||| || ||||||||| |||||| ||| | | || || |
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| T |
39786371 |
gatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtttctttagcatctttcgagatttttgcatttggaggcaagatttgtt |
39786470 |
T |
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| Q |
635 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
683 |
Q |
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|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
39786471 |
tcatgatcctaccaacattagctattggaagcaaacgatcttgctcttt |
39786519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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