View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0666_low_10 (Length: 265)
Name: NF0666_low_10
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_10 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 25961583 - 25961373
Alignment:
| Q |
55 |
ttattgatcgaaaactcaatacattgcatcaattcatcaaagagtgatatttactgagtactctacctctcccacaaccaacaaatgaccaccttcttca |
154 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25961583 |
ttattgatcgaaaactcaatacatttcatcaattcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccaccttcttca |
25961484 |
T |
|
| Q |
155 |
atcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
25961483 |
atcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactct |
25961384 |
T |
|
| Q |
255 |
caaaccctacc |
265 |
Q |
| |
|
||||||||||| |
|
|
| T |
25961383 |
caaaccctacc |
25961373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 25883528 - 25883719
Alignment:
| Q |
74 |
tacattgcatcaattcatcaaagagtgatatttactgagtactctacctctcccacaaccaacaaatgaccaccttcttcaatcaccttaacaccactct |
173 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25883528 |
tacatttcatcaattcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactct |
25883627 |
T |
|
| Q |
174 |
catttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctacc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
25883628 |
catttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactctcaaaccctacc |
25883719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 87 - 265
Target Start/End: Original strand, 25923718 - 25923896
Alignment:
| Q |
87 |
ttcatcaaagagtgatatttactgagtactctacctctcccacaaccaacaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctact |
186 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25923718 |
ttcatcaaagagtgatattaattgagtactcttcctctcccacaaccaacaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctact |
25923817 |
T |
|
| Q |
187 |
aagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctacc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
25923818 |
aagatgctcacaaacactaacttcaaatccaacttcaccttttcctcctccttctaccgtcacactctcaaaccctacc |
25923896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 25904863 - 25905053
Alignment:
| Q |
74 |
tacattgcatcaattcatcaaagagtgatatttactgagtactctacctctcccacaaccaacaaatgaccaccttcttcaatcaccttaacaccactct |
173 |
Q |
| |
|
||||| ||||||||||||| || | ||||||||| |||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25904863 |
tacatggcatcaattcatccaaca-tgatatttattgagtactcttcctgtcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactct |
25904961 |
T |
|
| Q |
174 |
catttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctacc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25904962 |
catttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccctttccacctccttccaccgtcacactctcaaaccctacc |
25905053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3268 times since January 2019
Visitors: 4030