View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_low_15 (Length: 220)
Name: NF0666_low_15
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3166512 - 3166704
Alignment:
| Q |
1 |
ggatttatctaagccatgttccatttctgattaccaattttataacagagaggttgggcattatcatttatcattagaacaaacaaagcaaaaggaagtg |
100 |
Q |
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| T |
3166512 |
ggatttatctaagccatgttccatttctgattaccaattttataacagagaggttgggcattatcatttatcattagaacaaacaaagcaaaaggaagtg |
3166611 |
T |
|
| Q |
101 |
tgccacctaattgaccatgtgcaagtgatcttgtattagacattgtgtgtgacatatttcaactaagtggtcagcacctgtgaataacaattgccag |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3166612 |
tgccacctaattgaccatgtgcaagtgatcttgtattagacat----tgtgacatatttcaactaagtggtcagcacctgtgaataacaattgccag |
3166704 |
T |
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