View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0666_low_2 (Length: 689)

Name: NF0666_low_2
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0666_low_2
NF0666_low_2
[»] chr5 (9 HSPs)
chr5 (180-494)||(11335599-11335917)
chr5 (498-656)||(11335995-11336153)
chr5 (23-102)||(11335151-11335230)
chr5 (203-296)||(24136585-24136679)
chr5 (36-102)||(11335202-11335269)
chr5 (33-102)||(11335120-11335192)
chr5 (35-68)||(11335312-11335345)
chr5 (50-102)||(11335289-11335341)
chr5 (47-94)||(9511903-9511953)
[»] chr6 (7 HSPs)
chr6 (203-280)||(21861811-21861888)
chr6 (203-278)||(9402981-9403056)
chr6 (45-96)||(22860895-22860946)
chr6 (203-280)||(13167196-13167273)
chr6 (47-96)||(18981357-18981407)
chr6 (36-70)||(22860737-22860771)
chr6 (35-84)||(22860868-22860918)
[»] chr2 (7 HSPs)
chr2 (35-84)||(29409358-29409407)
chr2 (36-84)||(38583917-38583965)
chr2 (245-292)||(32290392-32290441)
chr2 (35-84)||(8986315-8986364)
chr2 (45-95)||(8986342-8986394)
chr2 (35-84)||(8986463-8986512)
chr2 (35-72)||(38584023-38584060)
[»] chr4 (6 HSPs)
chr4 (242-280)||(16870260-16870298)
chr4 (49-97)||(16871166-16871216)
chr4 (36-70)||(16871155-16871189)
chr4 (35-84)||(16870846-16870895)
chr4 (45-95)||(16870873-16870925)
chr4 (35-84)||(16870994-16871043)
[»] chr7 (4 HSPs)
chr7 (35-72)||(26403160-26403197)
chr7 (45-95)||(46963711-46963763)
chr7 (35-84)||(46963741-46963790)
chr7 (35-79)||(46963590-46963634)
[»] chr3 (5 HSPs)
chr3 (215-280)||(50295310-50295375)
chr3 (39-84)||(42530833-42530879)
chr3 (35-69)||(50295873-50295907)
chr3 (47-79)||(42530805-42530837)
chr3 (53-96)||(50295884-50295928)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 180 - 494
Target Start/End: Original strand, 11335599 - 11335917
Alignment:
Q  180 tgaagcaccaaaacgaaccga-ctaaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 278  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11335599 tgaaacaccaaaacgaaccaaactaaacaaaccaaaacaagttgaaccaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaata 11335698  T
Q  279 cataaacacacgaagactnnnnnnnctcacaaacggattactagactcaagtaaataaaccnnnnnnnggagatcagcccaaacataaaactcaagcaaa 378  Q
    || |||||||||||||||       |||||||||||||||||||||||| |||||||||||       ||||||| ||||||||||||||||||||||||    
T  11335699 cagaaacacacgaagactaaaaaaactcacaaacggattactagactcacgtaaataaaccaaaaaaaggagatcggcccaaacataaaactcaagcaaa 11335798  T
Q  379 aagaaccaccaaccttgattaaattaaaagaataatgaa---aaggagaataatcggatgcaaatctgactccaaaatccacaaacaaaatatgattcct 475  Q
    |||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| ||||||||||||| ||||||||||||| | ||||||    
T  11335799 aagaaccaccaaccttgattaaattaaaagaacaatgaaaagaagaagaataatcggctgcaagtctgactccaaaacccacaaacaaaatctaattcct 11335898  T
Q  476 ctatatattcccaattatg 494  Q
    | |||||||||||||||||    
T  11335899 ccatatattcccaattatg 11335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 498 - 656
Target Start/End: Original strand, 11335995 - 11336153
Alignment:
Q  498 aatccaaatgtagccataaaagcaaacaacnnnnnnnggcaatttcaaatccaccaacatcagtgtttcaacaaagagtcaatcggagtcaaataannnn 597  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||        
T  11335995 aatccaaatgtagccataaaagcaaacaacacaaaaaggcaatttcaaatccaccaacaacattgtttcaacaaagagtcaatcggagtcaaataatttt 11336094  T
Q  598 nnnagcgacgaatgcacaataaccaacaaatacaatcagtcttcaatcaagataaagat 656  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11336095 tttagcgacgaatgcacaataaccaacaaatataatcagtcttcaatcaaaataaagat 11336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 11335151 - 11335230
Alignment:
Q  23 atcatcaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11335151 atcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 11335230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 24136679 - 24136585
Alignment:
Q  203 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca--taaacacacgaagact 296  Q
    |||| |||||| ||||| ||||| |||||||| | || |||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  24136679 aaacgaaccaagacaagctgaaccaaagcaacca-agacagacatagacaaacaaccaattaaccaaacacaaacacaatgaaacacacgaagact 24136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 11335202 - 11335269
Alignment:
Q  36 gagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaaagcaatcaatcaggagaa 102  Q
    ||||||||||| |||||||||||| |||||||| |||  ||||||||||||||||||||| |||||||    
T  11335202 gagaagtgcaaagcaatcaatcaggagaatcaataagaggagaagtgcaaagcaatcaataaggagaa 11335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 11335120 - 11335192
Alignment:
Q  33 gaggagaagtgcaatgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaatcaggagaa 102  Q
    |||||||||||||  |||||||||||||||||||| ||||    ||||||||||| |||||||||||| ||||    
T  11335120 gaggagaagtgcagggcaatcaatcagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaa 11335192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 11335312 - 11335345
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  11335312 ggagaagtgcaatgcaatcaatcagaagaatcaa 11335345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 11335289 - 11335341
Alignment:
Q  50 aatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 102  Q
    ||||||||| |||||| |||||| ||||||||||| |||||||||||| ||||    
T  11335289 aatcaatcaaaagaatgaaaaggggagaagtgcaatgcaatcaatcagaagaa 11335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 9511953 - 9511903
Alignment:
Q  47 tgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaat 94  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||    
T  9511953 tgcaatcaatcagaagaatcaaaaggggatcagaagtgcaatgcaatcaat 9511903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 21861888 - 21861811
Alignment:
Q  203 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 280  Q
    |||| |||||| ||||| ||| | |||||||| |||| || ||| |||||||||||||||||||||||||||||||||    
T  21861888 aaacgaaccaagacaagctgagccaaagcaaccagagacatacatagacgaacaaccaattaaccaaacacaaacaca 21861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 9403056 - 9402981
Alignment:
Q  203 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 278  Q
    |||| |||||| ||||||||||| ||||||||  ||  || ||| ||| |||||||||||||||||||||||||||    
T  9403056 aaacgaaccaagacaagttgaaccaaagcaacccgaaacaaacaaagaggaacaaccaattaaccaaacacaaaca 9402981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 22860946 - 22860895
Alignment:
Q  45 aatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatca 96  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  22860946 aatgcaatcaatcggaagaaccaaaaggggagaagtgcaatgcaatcaatca 22860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 13167273 - 13167196
Alignment:
Q  203 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 280  Q
    |||| |||||| ||||| ||| | |||||||| |||| || ||| | ||||||||||||||||||||| |||||||||    
T  13167273 aaacgaaccaagacaagctgacccaaagcaaccagagacaaacataaacgaacaaccaattaaccaaatacaaacaca 13167196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 18981407 - 18981357
Alignment:
Q  47 tgcaatcaatcagaagaatcaaaaggtg-agaagtgcaaagcaatcaatca 96  Q
    |||||||||||||||||||||||||| | | |||||||| |||||||||||    
T  18981407 tgcaatcaatcagaagaatcaaaaggagaaaaagtgcaatgcaatcaatca 18981357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 22860771 - 22860737
Alignment:
Q  36 gagaagtgcaatgcaatcaatcagaagaatcaaaa 70  Q
    |||||||||||||||||||| ||||||||||||||    
T  22860771 gagaagtgcaatgcaatcaaacagaagaatcaaaa 22860737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 22860918 - 22860868
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaa 84  Q
    |||||||||||||||||||||||| ||||||||| | || |||||||||||    
T  22860918 ggagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaa 22860868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 29409358 - 29409407
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  29409358 ggagaagtgcaatgcaatcaatcagaagaatcaacaggggagacgtgcaa 29409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38583917 - 38583965
Alignment:
Q  36 gagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  38583917 gagaagtgcaatacaatcaatcagaagaatcaaagggggagaagtgcaa 38583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 32290441 - 32290392
Alignment:
Q  245 cagagacgaacaaccaattaaccaaacacaaacac--ataaacacacgaa 292  Q
    ||||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  32290441 cagagacgaacaaccaattaatcaagcacaaacacaaataaacacacgaa 32290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 8986364 - 8986315
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  8986364 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 8986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 8986394 - 8986342
Alignment:
Q  45 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 95  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  8986394 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 8986342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 8986512 - 8986463
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    ||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  8986512 ggagaagtgcaatgcaatcaatcggaagaaccaatagggtagaagtgcaa 8986463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 38584023 - 38584060
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 72  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  38584023 ggagaagtgcaatgcaatcactcagaaaaatcaaaagg 38584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 16870298 - 16870260
Alignment:
Q  242 agacagagacgaacaaccaattaaccaaacacaaacaca 280  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16870298 agacatagacgaacaaccaattaaccaaacacaaacaca 16870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 16871216 - 16871166
Alignment:
Q  49 caatcaatcagaagaatcaaaa--ggtgagaagtgcaaagcaatcaatcag 97  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  16871216 caatcaatcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcag 16871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 16871189 - 16871155
Alignment:
Q  36 gagaagtgcaatgcaatcaatcagaagaatcaaaa 70  Q
    ||||||||||||||||||||||||| |||||||||    
T  16871189 gagaagtgcaatgcaatcaatcagacgaatcaaaa 16871155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 16870895 - 16870846
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  16870895 ggagaagtacaatgcaatcaatcggaagaaccaacaggggagaagtgcaa 16870846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 16870925 - 16870873
Alignment:
Q  45 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 95  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  16870925 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 16870873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 16871043 - 16870994
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    ||||||||||||||||||||||| |||||| ||| ||| || ||||||||    
T  16871043 ggagaagtgcaatgcaatcaatcggaagaaccaataggggaaaagtgcaa 16870994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 26403197 - 26403160
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 72  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26403197 ggagaagtgcaatgcaatcaatcaaaagaatcaaaagg 26403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 46963711 - 46963763
Alignment:
Q  45 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 95  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  46963711 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 46963763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 46963741 - 46963790
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 84  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  46963741 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 46963790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 46963590 - 46963634
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaag 79  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  46963590 ggagaagtgcaatgcaatcaatcggaagaaccaataggggagaag 46963634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 50295375 - 50295310
Alignment:
Q  215 acaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 280  Q
    ||||| ||||| |||||||| | || |||||| |||| ||||||||||||| ||||||||||||||    
T  50295375 acaagctgaaccaaagcaaccatagacagacatagacaaacaaccaattaatcaaacacaaacaca 50295310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42530879 - 42530833
Alignment:
Q  39 aagtgcaatgcaatcaatcagaagaatcaaaaggtg-agaagtgcaa 84  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  42530879 aagtgaaatgcaatcaatcagaagaatcaaaaggggaagaagtgcaa 42530833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 50295907 - 50295873
Alignment:
Q  35 ggagaagtgcaatgcaatcaatcagaagaatcaaa 69  Q
    |||||||||||||||||||||||| ||||||||||    
T  50295907 ggagaagtgcaatgcaatcaatcaaaagaatcaaa 50295873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 42530837 - 42530805
Alignment:
Q  47 tgcaatcaatcagaagaatcaaaaggtgagaag 79  Q
    |||||||||||||||||||||||||| ||||||    
T  42530837 tgcaatcaatcagaagaatcaaaaggggagaag 42530805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 50295928 - 50295884
Alignment:
Q  53 caatcagaagaatcaaaag-gtgagaagtgcaaagcaatcaatca 96  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||    
T  50295928 caatcagaagaatcaaaagagggagaagtgcaatgcaatcaatca 50295884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3178 times since January 2019
Visitors: 4029