View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_low_3 (Length: 525)
Name: NF0666_low_3
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 180 - 383
Target Start/End: Complemental strand, 52053667 - 52053464
Alignment:
| Q |
180 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
279 |
Q |
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| T |
52053667 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
52053568 |
T |
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| Q |
280 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
379 |
Q |
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| T |
52053567 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
52053468 |
T |
|
| Q |
380 |
agct |
383 |
Q |
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|||| |
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| T |
52053467 |
agct |
52053464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 52053824 - 52053733
Alignment:
| Q |
23 |
cacatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggccaaataactggtagagtctgaaaactgaaaccatgtttggcag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52053824 |
cacatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggccaaataactggtagagtctgaaaactgaaatcatgtttggcag |
52053733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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