View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_low_6 (Length: 431)
Name: NF0666_low_6
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 49133193 - 49133590
Alignment:
| Q |
30 |
aggattatattgaaactcttcaaaaccttcctaaagttaagcttttggatttgttccagaacaaacacgcgcgttctgtagttgtaagtaacatacttaa |
129 |
Q |
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| T |
49133193 |
aggattatattgaaactcttcaaaaccttcctaaagttaagcttttggatttgttccagaacaaacatgcgcgttctgtagttgtaagtaacatacttaa |
49133292 |
T |
|
| Q |
130 |
ttttctaccaaaaattcaatcaaagctatatttagatattcagaaagtatctaactggttgaaatgatatcagattggtgttggattaatggtatgtcaa |
229 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49133293 |
ttttctaccaaaaattcaatcaaagctacatttagatattcagaaagtatctaactggttgaaatgatatcagattggtgttggattaatggtatgtcaa |
49133392 |
T |
|
| Q |
230 |
caatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagtttgaaaaaatacattttgattttgaaaaatcaaagt |
329 |
Q |
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| T |
49133393 |
caatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagtttgaaaaaatacattttgattttgaaaaatcaaagt |
49133492 |
T |
|
| Q |
330 |
agctctctttgttta----tatttatttatttatatatcgtgctacaacatgacttgcaggactttcttcgggaaaaattggtaccatagcctatgct |
423 |
Q |
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| T |
49133493 |
agctctctttgtttatatttatttatttatttatatatcgcgctacaacatgacttgcaggactttcttcgggaaaaattggtaccatagcctatgct |
49133590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 6927070 - 6927164
Alignment:
| Q |
199 |
tcagattggtgttggattaatggtatgtcaacaatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagt |
293 |
Q |
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| T |
6927070 |
tcagattggagttggattaatggcatttcaacaatctgttggaattaatggcataggattctatacagctgagacttttgtagcagctggtaagt |
6927164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 6926898 - 6926955
Alignment:
| Q |
30 |
aggattatattgaaactcttcaaaaccttcctaaagttaagcttttggatttgttcca |
87 |
Q |
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||||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
6926898 |
aggataatattgaaactcttcaaagccttcctaagactaagtttttggatttgttcca |
6926955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 13883747 - 13883705
Alignment:
| Q |
208 |
tgttggattaatggtatgtcaacaatctgttggaattaatggt |
250 |
Q |
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| T |
13883747 |
tgttggattaatggtatgtgaacaatctgttggaattgatggt |
13883705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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