View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0666_low_7 (Length: 371)
Name: NF0666_low_7
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_7 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0032 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 15646419 - 15646069
Alignment:
| Q |
21 |
acatcatcatgaatcaagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacactt |
120 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15646419 |
acatcaccatgagtcaagaataaattagaaacagcatcccacaaactctgacgcccccgaagattgcaaggagcataaatatttgccaaacaaaacactt |
15646320 |
T |
|
| Q |
121 |
cattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataatacc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15646319 |
cattatttttaataaacgaccccttaatcatcaaacaatgcgaaaaattaaccgtcaaccaaacatccactacattaggatcccacaccgtaattatacc |
15646220 |
T |
|
| Q |
221 |
accagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15646219 |
accagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagagcgacacacgaactcatcaaccactgccaactttgattct |
15646120 |
T |
|
| Q |
321 |
tgcaaacataacactgacggtttcctctcggcaacaagtctaagaacctcc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15646119 |
tgcaaacataacactgacggtttcctctcggcaacaagtctaagaacctcc |
15646069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 42 - 349
Target Start/End: Complemental strand, 17824013 - 17823706
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| || |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||| || |
|
|
| T |
17824013 |
aaattagagaccgcatcccacaaaacctgacgtcccctattattacaaggagcataaatatttgccaaacaaaacatttcattattttttaagaacgtcc |
17823914 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
|||| ||||||| |||| || |||||| || |||| ||||||||||| ||| |||||| |||||||||||||||||||||||| || |||||| || |
|
|
| T |
17823913 |
ccttgatcatcaagcaatttgcaatgtttacagtcatccaaacatccaacacactaggatcccacaccgtaataataccaccagatgcgtcaactgaaga |
17823814 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacactgacggt |
341 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||| | |||||||||||| || ||||||||||| ||||||| |||||||| | ||||||||||| ||| |
|
|
| T |
17823813 |
tttaaaagaaaaggccattggagcagacccccatagagaacgacacaaaaattcatcaaccacctccaacttcgattcttgtatacataacactgtcggc |
17823714 |
T |
|
| Q |
342 |
ttcctctc |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
17823713 |
ttcctctc |
17823706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 21967563 - 21967913
Alignment:
| Q |
21 |
acatcatcatgaatcaagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacactt |
120 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
21967563 |
acatcaccatgaaccaagaataaattagaaacagcttcccacaaactctgacgccccctagaattgcaaggagcataaatatttaccaaacaaaacactt |
21967662 |
T |
|
| Q |
121 |
cattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataatacc |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21967663 |
cattattattaataaacgaccccttaatcatcaaacaatgtgaaatattaaccgtcaaccaaacatccactacattaggatcccacaccgtaataatacc |
21967762 |
T |
|
| Q |
221 |
accagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattct |
320 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21967763 |
accagaggcaccaactgcagctttgaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccacttccaactttgattct |
21967862 |
T |
|
| Q |
321 |
tgcaaacataacactgacggtttcctctcggcaacaagtctaagaacctcc |
371 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
21967863 |
tgcaaacataacactgacggtttccgctcggcaacaagtcgaagaacctcc |
21967913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 17151063 - 17150713
Alignment:
| Q |
21 |
acatcatcatgaatcaagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacactt |
120 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
17151063 |
acatcaccatgaaccaagaacaaattagagacagcttcccacaaactctgacgccccctaatattgcaaggagcataaatatttaccaaacaaaacactt |
17150964 |
T |
|
| Q |
121 |
cattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataatacc |
220 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17150963 |
cattatttttaataaacaaccccttgatcatcaaacaatttgcaatgtttaccgtcaaccaaacatccaacacattaggatcccacaccgtaataatacc |
17150864 |
T |
|
| Q |
221 |
accagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattct |
320 |
Q |
| |
|
|||||| | |||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
17150863 |
accagatgtaccaactgaaggtttaaaagaaaaagccataggatcaggcccccaaatagatcgacacaagaactcatcaaccacttccaacttcgattct |
17150764 |
T |
|
| Q |
321 |
tgcaaacataacactgacggtttcctctcggcaacaagtctaagaacctcc |
371 |
Q |
| |
|
|| |||||||||| |||||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
17150763 |
tgtaaacataacattgacggcttcctctcgacaactagtctattaacctcc |
17150713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 35 - 352
Target Start/End: Original strand, 3517668 - 3517985
Alignment:
| Q |
35 |
caagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaata |
134 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| |||| ||||||||| ||| |||||||||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
3517668 |
caagaataaattagagatagcttcccacaaaatctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcatgatttttaata |
3517767 |
T |
|
| Q |
135 |
aacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaa |
234 |
Q |
| |
|
||||||||||| || |||| ||||| || ||| || ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
3517768 |
aacgaccccttgattatcaaacaatttgcaatatttaccgtcaaccaaacatccaacacactaggatcccacaccgtaataatgccaccagacacaccaa |
3517867 |
T |
|
| Q |
235 |
ctgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacac |
334 |
Q |
| |
|
||| || |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||| |||| || |||||||| ||||||||||| |
|
|
| T |
3517868 |
ctgaagatttaaaagaaaaagccatgggatcaggcccccaaagagaacgacacaagtactcatcaaccacttccaatttcgattcttgtaaacataacac |
3517967 |
T |
|
| Q |
335 |
tgacggtttcctctcggc |
352 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
3517968 |
tgacggcttcctctcggc |
3517985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 42 - 334
Target Start/End: Original strand, 23824558 - 23824850
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| || ||||||||||| |||||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||| || | ||||| || |
|
|
| T |
23824558 |
aaattagagaccgcatcccacaagacctgacgtcctctattattacaaggagcatatatatttgccaaacaaaacacttcattattatttaaaaacgtcc |
23824657 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
| |||||||||| |||| || || ||| || |||| ||||||||||| ||| |||| | |||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
23824658 |
ctttaatcatcaagcaatttgcaaagtttacagtcacccaaacatccaacacactagggtcccacacagtaataataccaccagaagcgccaactgaaga |
23824757 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacac |
334 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||| | |||||||||||| || || |||||||| ||||||| |||||||| | ||||||||| |
|
|
| T |
23824758 |
tttaaaagaaaaggccattgggtcagacccccatagagaacgacacaaaaattcgtcaaccacctccaacttcgattcttgtatacataacac |
23824850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 18292649 - 18292315
Alignment:
| Q |
21 |
acatcatcatgaatcaagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacactt |
120 |
Q |
| |
|
|||||| |||||| |||||| |||||||| | ||| ||||||||| |||| ||||||||| ||| |||||||||||||||||| |||||||||||| || |
|
|
| T |
18292649 |
acatcaccatgaaccaagaacaaattagagatagcttcccacaaaatctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacattt |
18292550 |
T |
|
| Q |
121 |
cattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataatacc |
220 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||| || |||||| ||||||| ||||||||||| ||| |||||| ||||||||||||||| || |
|
|
| T |
18292549 |
catgatttttaataaacgaccccttgatcatcaaacaatttgcaatgtttaccgtcatccaaacatccaacacactaggatcccacaccgtaataatgcc |
18292450 |
T |
|
| Q |
221 |
accagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattct |
320 |
Q |
| |
|
|||||| |||||||||| || ||||||| |||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||| |||| || |||||| |
|
|
| T |
18292449 |
accagacgcaccaactgaagatttaaaataaaaagccatgggatcaggcccccaaatagaacgacagaagtactcatcaaccacttccaatttcgattct |
18292350 |
T |
|
| Q |
321 |
tgcaaacataacactgacggtttcctctcggcaac |
355 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18292349 |
tgtaaacataacactgacggcttcctctcggcaac |
18292315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 36 - 355
Target Start/End: Original strand, 2897189 - 2897508
Alignment:
| Q |
36 |
aagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataa |
135 |
Q |
| |
|
||||| |||||||||| || ||||||||| | || ||||||||| ||| ||||||||||||| ||| | |||||||||| ||| | ||| ||||||| |
|
|
| T |
2897189 |
aagaacaaattagaaatggcttcccacaaaatttgtcgccccctattattgcaaggagcataaacattaactaaacaaaacatttcgtgattcttaataa |
2897288 |
T |
|
| Q |
136 |
acgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaac |
235 |
Q |
| |
|
|||||||||| ||||| | ||||| || ||| || ||||||||||||||||||| ||| |||||| |||||| |||||||||||||| || |||||||| |
|
|
| T |
2897289 |
acgaccccttgatcattaaacaatttgcaatatttaccgtcaaccaaacatccaaaacactaggatcccacacagtaataataccacctgacgcaccaac |
2897388 |
T |
|
| Q |
236 |
tgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacact |
335 |
Q |
| |
|
| || |||||||||||| ||||| ||||||| |||||||||||| ||||||||| |||||||||||||| ||| ||| |||||||| | |||||||| | |
|
|
| T |
2897389 |
agaaggtttaaaagaaaaggccatgggatcaggcccccaaatagatcgacacaagtactcatcaaccacttccaccttcgattcttgtacacataacatt |
2897488 |
T |
|
| Q |
336 |
gacggtttcctctcggcaac |
355 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
2897489 |
gacggcttcctctcggcaac |
2897508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 12124562 - 12124889
Alignment:
| Q |
28 |
catgaatcaagaataaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatt |
127 |
Q |
| |
|
|||||| |||||| |||||||| | ||| ||||||||| ||| ||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
12124562 |
catgaaccaagaacaaattagagatagcttcccacaaaagctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcattatt |
12124661 |
T |
|
| Q |
128 |
tttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaa |
227 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || |||||| ||||||| ||||||||||| ||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
12124662 |
tttaataaacgaccccttgatcatcaaacaatttgtaatgtttaccgtcatccaaacatccaacacactaggatcccacaccgtaataatgccaccagac |
12124761 |
T |
|
| Q |
228 |
gcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaac |
327 |
Q |
| |
|
|||||||||| || ||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||| |||| || |||||||| |||| |
|
|
| T |
12124762 |
gcaccaactgaagatttaaaagaaaaagcaatgggatcaagcccccaaatagaacgacacaagtactcatcaaccacttccaatttcgattcttgtaaac |
12124861 |
T |
|
| Q |
328 |
ataacactgacggtttcctctcggcaac |
355 |
Q |
| |
|
|||||||| |||| |||||||||||||| |
|
|
| T |
12124862 |
ataacactaacggcttcctctcggcaac |
12124889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 42 - 355
Target Start/End: Original strand, 591102 - 591415
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| ||||| |||||||| |||| |||||||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||| | |||||||| |
|
|
| T |
591102 |
aaattagatacagcctcccacaacatctgtcgccccctaatattagaaggagcataaatgtttgccaaacaaaacatgtcattgttttttaaaaacgacc |
591201 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
|||| ||||||| |||| || ||| || || |||| ||||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
591202 |
cctttatcatcaagcaatttgcaatatttacagtcatccaaacatccagcacactaggatcccacaccgtaataataccaccagacgcaccaactgaaga |
591301 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacactgacggt |
341 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||| ||||||| | |||||| | ||||||||||| | | |
|
|
| T |
591302 |
tttaaaagaaaaagccataggagtaggtccccatatagaacgacacaaaaactcatcaaccacctccaacttcgtttcttgtagacataacactgtcagc |
591401 |
T |
|
| Q |
342 |
ttcctctcggcaac |
355 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
591402 |
ttcctttcggcaac |
591415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 42 - 349
Target Start/End: Original strand, 47556280 - 47556587
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| | || ||||||||| ||| ||||||||| || |||||||||||||||||| |||||||| ||||| ||||||||| | ||| || | |
|
|
| T |
47556280 |
aaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgctacaaaggagc |
47556379 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
| |||| |||| ||||| | ||| || || | |||||| ||||||| ||| ||||| ||||| ||| |||||||| ||||||||||| |||| ||| |
|
|
| T |
47556380 |
ctttaacaatcaaacaattagcaatatttactgacaaccagacatccaacacagaaggatcccacaacgtgataatacctccagaagcaccgactgaagc |
47556479 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacactgacggt |
341 |
Q |
| |
|
|||||| ||| ||||||| ||||| |||||| | ||||||||||| |||||||| ||||| ||||||| || ||||| | ||||||||| | |||| |
|
|
| T |
47556480 |
tttaaaggaataagccatcaaatcagccccccataaggaacgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccggt |
47556579 |
T |
|
| Q |
342 |
ttcctctc |
349 |
Q |
| |
|
|| ||||| |
|
|
| T |
47556580 |
tttctctc |
47556587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 334
Target Start/End: Complemental strand, 22862978 - 22862686
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| | || ||||||||| ||| ||||||||| || ||||| |||||||||||| |||||||| ||||| ||||||||| | | ||| || | |
|
|
| T |
22862978 |
aaattagacaaagaatcccacaacacctgtcgccccctactatcacaagaagcataaatattcgccaaacagaacacctcattatttgttacaaaggagc |
22862879 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
| |||| |||| ||||| ||| || || | |||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
22862878 |
ctttaacaatcaaacaattatcaatatttactgacaaccagacatccaacacagaaggatcccacaccgtaataatacctccagaagcaccgactgaagc |
22862779 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacac |
334 |
Q |
| |
|
|||||| ||| ||||||| ||||| |||||| | || |||||||| |||||||| ||||| ||||||| || ||||| | ||||||||| |
|
|
| T |
22862778 |
tttaaaggaataagccatcaaatcagccccccataaggagcgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacac |
22862686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 322
Target Start/End: Complemental strand, 20695203 - 20694967
Alignment:
| Q |
86 |
acaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaaca |
185 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| |||| ||||||| | ||| ||| |||| |||| ||||| ||| || ||||||| ||||||| |
|
|
| T |
20695203 |
acaaggggcataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaaca |
20695104 |
T |
|
| Q |
186 |
tccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgac |
285 |
Q |
| |
|
|||| ||| ||| | |||||| ||||||||||||||||| |||||||||| || |||||||||||||||||| ||| |||| ||||| | ||||||| |
|
|
| T |
20695103 |
tccaacacactagagtcccacactgtaataataccaccagacgcaccaactgaaggtttaaaagaaaaagccatcggaccagatccccacaacgaacgac |
20695004 |
T |
|
| Q |
286 |
acaagaactcatcaaccactgccaactttgattcttg |
322 |
Q |
| |
|
| |||| |||| ||||| ||||||| |||||||| |
|
|
| T |
20695003 |
ataagacctcactcaccacctccaacttagattcttg |
20694967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 322
Target Start/End: Complemental strand, 20700681 - 20700445
Alignment:
| Q |
86 |
acaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaaca |
185 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| |||| ||||||| | ||| ||| |||| |||| ||||| ||| || ||||||| ||||||| |
|
|
| T |
20700681 |
acaaggggcataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaaca |
20700582 |
T |
|
| Q |
186 |
tccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgac |
285 |
Q |
| |
|
|||| ||| ||| | |||||| ||||||||||||||||| |||||||||| || |||||||||||||||||| ||| |||| ||||| | ||||||| |
|
|
| T |
20700581 |
tccaacacactagagtcccacactgtaataataccaccagacgcaccaactgaaggtttaaaagaaaaagccatcggaccagatccccacaacgaacgac |
20700482 |
T |
|
| Q |
286 |
acaagaactcatcaaccactgccaactttgattcttg |
322 |
Q |
| |
|
| |||| |||| ||||| ||||||| |||||||| |
|
|
| T |
20700481 |
ataagacctcactcaccacctccaacttagattcttg |
20700445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 349
Target Start/End: Complemental strand, 50212 - 49905
Alignment:
| Q |
42 |
aaattagaaacagcatcccacaaactctgacgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgacc |
141 |
Q |
| |
|
|||||||| ||||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||| || |
|
|
| T |
50212 |
aaattagagacagcgtcccacagaacctgtcgccccctattatcacaaggagcataaatatttgccaaacaaaacacttcattattttttatgaacgtcc |
50113 |
T |
|
| Q |
142 |
ccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagc |
241 |
Q |
| |
|
| || || |||| |||| || |||||| || |||| |||||||| || ||| |||||| ||| ||||||||||| |||||||| |||||||||| || |
|
|
| T |
50112 |
ctttgattatcaagcaatttgcaatgtttacagtcatccaaacattcaacacactaggatcccataccgtaataatgccaccagacgcaccaactgaaga |
50013 |
T |
|
| Q |
242 |
tttaaaagaaaaagccataggatcagacccccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacactgacggt |
341 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||| || ||| |
|
|
| T |
50012 |
tttaaaataaaagcccattggagcagacccccactgagagcgacacaagaactcatcaaccacctccaacttcgattcttgtatacataacaatgtcggc |
49913 |
T |
|
| Q |
342 |
ttcctctc |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
49912 |
ttcctctc |
49905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 318
Target Start/End: Complemental strand, 221903 - 221672
Alignment:
| Q |
87 |
caaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaaccgtcaaccaaacat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| || ||| ||| || | || | ||||| | ||| || || | ||||| |||| |
|
|
| T |
221903 |
caaggagcataaatatttgccaaacaaaacacttcattactttttatgaacttccctttcacaataaaacaattagcaatatttactgataaccagacat |
221804 |
T |
|
| Q |
187 |
ccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagaacgaca |
286 |
Q |
| |
|
|||| ||| |||||| |||||| || |||||||| ||||| |||||||| | || |||| ||||||| |||| |||||| |||||| | || ||||| |
|
|
| T |
221803 |
ccaccacactaggatcccacacagtgataatacctccagaggcaccaacagaaggtttataagaaaaggccaacggatcatccccccacaacgatcgaca |
221704 |
T |
|
| Q |
287 |
caagaactcatcaaccactgccaactttgatt |
318 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |
|
|
| T |
221703 |
caagaactcatcaaccacctccaacttcgatt |
221672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 349
Target Start/End: Complemental strand, 10798882 - 10798605
Alignment:
| Q |
72 |
cgccccctaagattacaaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgaccccttaatcatcagacaatgtgaaatgttaa |
171 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||||||| ||||| ||||||||| | ||| || || |||| |||| ||||| ||| || | |
|
|
| T |
10798882 |
cgccccctactatcacaaggagcataaatattcgccaaactgaacacctcattatttgctacaaaggagcctttaacaatcaaacaattatcaatattta |
10798783 |
T |
|
| Q |
172 |
ccgtcaaccaaacatccactacattaggattccacaccgtaataataccaccagaagcaccaactgcagctttaaaagaaaaagccataggatcagaccc |
271 |
Q |
| |
|
| | |||||| ||||||| ||| ||||| ||||||||| |||||||| ||||||||||| |||| ||||||||| ||| ||||||| ||||| ||| |
|
|
| T |
10798782 |
ctgacaaccagacatccaacacagaaggatcccacaccgtgataatacctccagaagcaccgactgaagctttaaaggaataagccatcaaatcagcccc |
10798683 |
T |
|
| Q |
272 |
ccaaatagaacgacacaagaactcatcaaccactgccaactttgattcttgcaaacataacactgacggtttcctctc |
349 |
Q |
| |
|
||| | ||||||||||| |||||||| ||||| ||||||| || ||||| | ||||||||| | |||||| ||||| |
|
|
| T |
10798682 |
ccataaggaacgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccggttttctctc |
10798605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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