View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0666_low_8 (Length: 361)
Name: NF0666_low_8
Description: NF0666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0666_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 36883095 - 36883398
Alignment:
| Q |
48 |
accttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacg |
147 |
Q |
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| T |
36883095 |
accttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacg |
36883194 |
T |
|
| Q |
148 |
aaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaag |
247 |
Q |
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| T |
36883195 |
aaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaag |
36883294 |
T |
|
| Q |
248 |
ccaagtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgcattcgacgcctttgccatttcttcacttatcggtctttgcttc |
347 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36883295 |
ccaagtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgcttc |
36883394 |
T |
|
| Q |
348 |
tctg |
351 |
Q |
| |
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|||| |
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| T |
36883395 |
tctg |
36883398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 51 - 349
Target Start/End: Original strand, 36893101 - 36893399
Alignment:
| Q |
51 |
ttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaa |
150 |
Q |
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||||||||||| |||||||| ||||| |||||||||||| || |||| ||||| || || ||||||||||| ||||||||||||| ||||||| || |
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| T |
36893101 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
36893200 |
T |
|
| Q |
151 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaagcca |
250 |
Q |
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||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
36893201 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgc |
36893300 |
T |
|
| Q |
251 |
agtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgcattcgacgcctttgccatttcttcacttatcggtctttgcttctc |
349 |
Q |
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|||||||| |||||||| ||| ||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |
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| T |
36893301 |
tgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttatcggtctctgcttctc |
36893399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 36903029 - 36903160
Alignment:
| Q |
174 |
tggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatg |
273 |
Q |
| |
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||||||||| |||| |||| |||||||| || ||| | | ||||| || |||| ||||||| ||||| |||| ||||||||| || ||||| || |
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| T |
36903029 |
tggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaac---tg |
36903125 |
T |
|
| Q |
274 |
aaggtagtccagtattagaaggcaagcctgcattc |
308 |
Q |
| |
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| ||||| ||||||||||||||||| ||||||||| |
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| T |
36903126 |
agggtagaccagtattagaaggcaatcctgcattc |
36903160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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