View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0667_high_3 (Length: 454)
Name: NF0667_high_3
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 35161833 - 35162253
Alignment:
| Q |
1 |
agccgcaattcacacttatcactaatatcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
100 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35161833 |
agccccaattcacacttatcactaatttcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
35161932 |
T |
|
| Q |
101 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35161933 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagccgagttcttcaaccaagtggtgagtctgttcgtta----tgttgattc |
35162028 |
T |
|
| Q |
201 |
actatttcatttcctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcta |
300 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35162029 |
actatt-cattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcga |
35162127 |
T |
|
| Q |
301 |
tgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatac |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162128 |
tgattaatttttcctttctctacttttctatcagattttaatgatatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatac |
35162227 |
T |
|
| Q |
401 |
gggattataattcacaaactcagaac |
426 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35162228 |
gggattataattcacaaactcagaac |
35162253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 44798278 - 44797861
Alignment:
| Q |
1 |
agccgcaattcacacttatcactaatatcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgca |
94 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
44798278 |
agccccaattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgca |
44798179 |
T |
|
| Q |
95 |
acatcctccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgt |
194 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| |
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| T |
44798178 |
acatcctccttcgtcctctgctgctctgaaaccccgcagaagaa---------gaagctcagttcttcaatcaagtggtgagtctgttggtta----tgt |
44798092 |
T |
|
| Q |
195 |
tgattcactatttcatttcctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaat |
294 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44798091 |
tgattcactatt-cattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaat |
44797993 |
T |
|
| Q |
295 |
catctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttgg |
394 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797992 |
catctatgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttgg |
44797893 |
T |
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| Q |
395 |
caatacgggattataattcacaaactcagaac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
44797892 |
caatacgggattataattcacaaactcagaac |
44797861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 44631292 - 44630881
Alignment:
| Q |
7 |
aattcacacttatcactaatatcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44631292 |
aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
44631193 |
T |
|
| Q |
101 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattc |
200 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
44631192 |
tccttcgtcctctgctgctctgaaaccccgcagaagaa---------gaagctcagttcttcaatcaagtggtgagtctgttggtta----tgttgattc |
44631106 |
T |
|
| Q |
201 |
actatttcatttcctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcta |
300 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631105 |
actatt-cattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcta |
44631007 |
T |
|
| Q |
301 |
tgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatac |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631006 |
tgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatac |
44630907 |
T |
|
| Q |
401 |
gggattataattcacaaactcagaac |
426 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44630906 |
gggattataattcacaaactcagaac |
44630881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 426
Target Start/End: Original strand, 39840359 - 39840504
Alignment:
| Q |
278 |
attgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataac |
377 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
39840359 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcgaaaaggataggataac |
39840455 |
T |
|
| Q |
378 |
caaatgtgccactttggcaatacgggattataattcacaaactcagaac |
426 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39840456 |
caaatgtgccactttggcaatacaagattataattcacaaactcagaac |
39840504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 426
Target Start/End: Original strand, 39845273 - 39845468
Alignment:
| Q |
240 |
cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt |
339 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
39845273 |
cttgttggaagatgattaatgacatgataatgtgttccattgtagttaattta---atcgatgattaattgttcctttctctacttttctatcagatttt |
39845369 |
T |
|
| Q |
340 |
aatga------------gatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaac |
426 |
Q |
| |
|
||| | ||| || ||| | | ||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39845370 |
aatcaaatcgaaaatcgaatcgaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacgggattataattcacaaactcggaac |
39845468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 39845164 - 39845241
Alignment:
| Q |
164 |
accaagtggtgagtctgttcgtta---gttatgttgattcactatttcatttcctgc-tgcaattcaatggatatatat |
238 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||| |||| ||| | ||||||||||||||||||||| |
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|
| T |
39845164 |
accatgtggtgagtctgttcgttactcgttatgttgattcactatt-cattccctccctgcaattcaatggatatatat |
39845241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 39840189 - 39840227
Alignment:
| Q |
55 |
ttctttattattctctctcagacgtatgtcaaaaaatgc |
93 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39840189 |
ttctttcttattctctctcagacgtacgtcaaaaaatgc |
39840227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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