View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0667_low_1 (Length: 567)

Name: NF0667_low_1
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0667_low_1
NF0667_low_1
[»] chr8 (10 HSPs)
chr8 (5-489)||(16330729-16331213)
chr8 (195-244)||(30585118-30585167)
chr8 (187-230)||(3943757-3943800)
chr8 (185-245)||(30629371-30629431)
chr8 (189-244)||(11556955-11557010)
chr8 (184-229)||(5739599-5739644)
chr8 (184-229)||(10440381-10440426)
chr8 (184-221)||(41953172-41953209)
chr8 (181-245)||(5071670-5071733)
chr8 (183-243)||(10265958-10266017)
[»] chr1 (10 HSPs)
chr1 (176-245)||(16567286-16567355)
chr1 (182-242)||(33318836-33318895)
chr1 (176-225)||(303693-303742)
chr1 (184-248)||(26462652-26462715)
chr1 (186-241)||(10042287-10042342)
chr1 (189-231)||(14577130-14577171)
chr1 (178-239)||(3497229-3497290)
chr1 (181-237)||(13342062-13342117)
chr1 (183-231)||(32346127-32346175)
chr1 (189-229)||(32483220-32483260)
[»] chr4 (12 HSPs)
chr4 (178-250)||(32754599-32754671)
chr4 (188-248)||(9018880-9018940)
chr4 (185-240)||(27131680-27131735)
chr4 (179-262)||(40583978-40584061)
chr4 (181-239)||(7367551-7367609)
chr4 (184-237)||(43061679-43061732)
chr4 (184-243)||(5032776-5032835)
chr4 (184-245)||(22402375-22402436)
chr4 (176-213)||(52738957-52738994)
chr4 (185-229)||(1678682-1678726)
chr4 (197-241)||(19176649-19176693)
chr4 (184-228)||(23817975-23818019)
[»] chr6 (13 HSPs)
chr6 (182-244)||(8013842-8013904)
chr6 (178-224)||(32862757-32862803)
chr6 (185-240)||(2468480-2468535)
chr6 (183-230)||(34443049-34443096)
chr6 (186-240)||(3964293-3964347)
chr6 (187-227)||(34406440-34406480)
chr6 (184-245)||(4382841-4382902)
chr6 (184-229)||(8805967-8806012)
chr6 (133-166)||(34923229-34923262)
chr6 (181-229)||(4240917-4240965)
chr6 (194-242)||(29236253-29236301)
chr6 (189-217)||(34443447-34443475)
chr6 (178-210)||(34444749-34444781)
[»] chr2 (7 HSPs)
chr2 (187-249)||(37844187-37844249)
chr2 (177-240)||(5453707-5453770)
chr2 (178-245)||(30289802-30289869)
chr2 (185-236)||(17386478-17386529)
chr2 (183-226)||(39941300-39941343)
chr2 (187-237)||(16742875-16742923)
chr2 (181-217)||(22877112-22877148)
[»] chr5 (8 HSPs)
chr5 (189-248)||(34166112-34166171)
chr5 (173-223)||(14332155-14332205)
chr5 (181-234)||(26208009-26208062)
chr5 (183-230)||(29587687-29587734)
chr5 (193-239)||(35818985-35819031)
chr5 (185-238)||(39828465-39828517)
chr5 (184-236)||(13049986-13050038)
chr5 (194-230)||(27976384-27976420)
[»] chr3 (7 HSPs)
chr3 (184-239)||(17105260-17105315)
chr3 (181-239)||(35335599-35335657)
chr3 (195-237)||(9498877-9498919)
chr3 (188-245)||(48448388-48448445)
chr3 (194-230)||(28286906-28286942)
chr3 (181-229)||(35990529-35990576)
chr3 (194-246)||(42945011-42945063)
[»] chr7 (4 HSPs)
chr7 (187-231)||(6632426-6632470)
chr7 (198-245)||(35108021-35108067)
chr7 (194-239)||(25452173-25452218)
chr7 (185-229)||(34399904-34399948)


Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 5 - 489
Target Start/End: Complemental strand, 16331213 - 16330729
Alignment:
Q  5 ctttcatcaattagatctggatagttcctttccttcagtagtggcctggcctgaaaattaagcaagagataaattttttgaaaggaacatgcaaattgca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16331213 ctttcatcaattagatctggatagttcctttccttcagtagtggcctggcctgaaaattaagcaagagataaattttttgaaaggaacatgcaaattgca 16331114  T
Q  105 atgaatttaatgtgacacttattcactttgtaacatcgacacttcatattgaagacgtgtctgatgccgagacgatactgacacatgtggttacattcaa 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16331113 atgaatttaatgtgacacttattcactttctaacatcgacacttcatattgaagacgtgtctgatgccgagacggtactgacacatgtggttacatttaa 16331014  T
Q  205 tcattttcattttcttaaattattactagtgtctacatgtcggtacaaatgtcatgtcatttgtctatgctttagagcgtattctccatcaatatatcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16331013 tcattttcattttcttaaattattactagtgtctacatgtcggtacaaatgtcatgtcatttgtctatgctttagagcgtattctccatcaatatatcaa 16330914  T
Q  305 tggaaaagattatgattgcaacatcacattgaatatatgtatcagtaaaaaaccaactcatagtattttgattgaggagagtaatggaacaaaaatatat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16330913 tggaaaagattatgattgcaacatcacattgaatatatgtatcagtaaaaaaccaactcatagtattttgattgaggagagtaatggaacaaaaatatat 16330814  T
Q  405 gctatattcattcattaaaagtgctagtttgatgaagattgttacccatcccactagacttttgtgtccaattcttttgtctgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16330813 gctatattcattcattaaaagtgctagtttgatgaagattgttacccatcccacaagacttttgtgtccaattcttttgtctgtg 16330729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 30585118 - 30585167
Alignment:
Q  195 ttacattcaatcattttcattttcttaaattattactagtgtctacatgt 244  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaattattattagtgtctacatgt 30585167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 3943800 - 3943757
Alignment:
Q  187 acatgtggttacattcaatcattttcattttcttaaattattac 230  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  3943800 acatgtggttacattcaatcacttttattttcttaaattattac 3943757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 30629431 - 30629371
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    ||||||||| ||||||||||||| |||||||||  |||| ||||||  |||||||||||||    
T  30629431 acacatgtgtttacattcaatcactttcatttttataaagtattaccggtgtctacatgtc 30629371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 11556955 - 11557010
Alignment:
Q  189 atgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgt 244  Q
    ||||||||||||||||||| ||  ||||||| ||||||||||  ||||||||||||    
T  11556955 atgtggttacattcaatcacttaaattttctcaaattattacaggtgtctacatgt 11557010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 5739644 - 5739599
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    |||||||||  |||||||||||||||| |||||||| |||||||||    
T  5739644 gacacatgtacttacattcaatcatttccattttctcaaattatta 5739599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 10440426 - 10440381
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    ||||||||| || ||||||||||| ||| |||||||||||||||||    
T  10440426 gacacatgtagtaacattcaatcacttttattttcttaaattatta 10440381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 41953172 - 41953209
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttctta 221  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  41953172 gacacatgtgattacattcaatcactttcattttctta 41953209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 5071733 - 5071670
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    |||||||||| || ||||||||||||| ||  |||||||||| |||||||  |||||||||||||    
T  5071733 actgacacatatgattacattcaatcacttgtattttcttaagttattac-cgtgtctacatgtc 5071670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 10266017 - 10265958
Alignment:
Q  183 tgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatg 243  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||| ||   |||||||||||    
T  10266017 tgacatatgtggttacattcaatcactttcatttt-ttaaattactatcggtgtctacatg 10265958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 16567355 - 16567286
Alignment:
Q  176 acgatactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||    
T  16567355 acgatactgacacatgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc 16567286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 33318895 - 33318836
Alignment:
Q  182 ctgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacat 242  Q
    |||||||||||||||||||| ||||| | |||||||||||| |||||||| ||||||||||    
T  33318895 ctgacacatgtggttacatttaatcactctcattttcttaagttattact-gtgtctacat 33318836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 303742 - 303693
Alignment:
Q  176 acgatactgacacatgtggttacattcaatcattttcattttcttaaatt 225  Q
    ||||||||||||| |||||||||||||||| | ||||||||||| |||||    
T  303742 acgatactgacacttgtggttacattcaattactttcattttctcaaatt 303693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 26462652 - 26462715
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggt 248  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||  |||||| || |||||||    
T  26462652 gacacatgtgattacattcaattattt-cattttcttaaattattatcagtgtcgacgtgtcggt 26462715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 10042342 - 10042287
Alignment:
Q  186 cacatgtggttacattcaatcattttcattttcttaaattattactagtgtctaca 241  Q
    |||||||||||||||||||||| ||  ||||||  ||||||||||| |||||||||    
T  10042342 cacatgtggttacattcaatcacttctattttcacaaattattactggtgtctaca 10042287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 14577171 - 14577130
Alignment:
Q  189 atgtggttacattcaatcattttcattttcttaaattattact 231  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  14577171 atgtggttacaatcaatcattt-cattttcttaaattattact 14577130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 3497229 - 3497290
Alignment:
Q  178 gatactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    |||||||||||||||| ||| ||||||||| ||||||| | | ||||||||| | |||||||    
T  3497229 gatactgacacatgtgattatattcaatcactttcattatttaaaattattattggtgtcta 3497290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 13342117 - 13342062
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtc 237  Q
    |||| ||||||||||||||||||| ||||| ||||| || ||||||||| |||||||    
T  13342117 actgccacatgtggttacattcaa-catttccatttgctcaaattattattagtgtc 13342062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 32346175 - 32346127
Alignment:
Q  183 tgacacatgtggttacattcaatcattttcattttcttaaattattact 231  Q
    ||||||| ||||||||||||||||  |||||||||| ||||||| ||||    
T  32346175 tgacacaagtggttacattcaatccctttcattttcataaattactact 32346127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 32483220 - 32483260
Alignment:
Q  189 atgtggttacattcaatcattttcattttcttaaattatta 229  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  32483220 atgtgtttacattcaatcattttcgtttttttaaattatta 32483260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 32754671 - 32754599
Alignment:
Q  178 gatactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggtac 250  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||| ||||    
T  32754671 gatactgacatgtgtggttacattcaatcactttcattttcttaaactattacaagtgtctacgtgtcagtac 32754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 9018880 - 9018940
Alignment:
Q  188 catgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggt 248  Q
    |||||||||||||||||| | ||||||||||| |||||| |||| ||||||||||||||||    
T  9018880 catgtggttacattcaattactttcattttctcaaattactactggtgtctacatgtcggt 9018940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 27131680 - 27131735
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattattactagtgtctac 240  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| | |||||||    
T  27131680 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctac 27131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 40583978 - 40584061
Alignment:
Q  179 atactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggtacaaatgtcatgtc 262  Q
    ||||||||||||||| ||||||||||||| ||| ||||| | |||||||||  |||||| |||||||  ||  |||||||||||    
T  40583978 atactgacacatgtgtttacattcaatcacttttattttttaaaattattataagtgtccacatgtcaatatcaatgtcatgtc 40584061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 7367609 - 7367551
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    |||||||||||||||||| ||||||||  |||||||||| ||||||||| | |||||||    
T  7367609 actgacacatgtggttacgttcaatcaccttcattttctcaaattattattggtgtcta 7367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 43061679 - 43061732
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtc 237  Q
    ||||||||| |||||||||||| ||||  ||||||| |||||||||||||||||    
T  43061679 gacacatgttgttacattcaattatttatattttctcaaattattactagtgtc 43061732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 5032835 - 5032776
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatg 243  Q
    ||||||| | ||||||||| |||||||||||||||| ||||||||| | || ||||||||    
T  5032835 gacacatatagttacattctatcattttcattttctgaaattattattggtttctacatg 5032776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 22402436 - 22402375
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    |||||||||||||||||||||||| ||  ||||||| || |||||||  || ||||||||||    
T  22402436 gacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtc 22402375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 52738957 - 52738994
Alignment:
Q  176 acgatactgacacatgtggttacattcaatcattttca 213  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  52738957 acgacactgacacatgtggttacattcaatcactttca 52738994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 1678726 - 1678682
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    |||||||| |||||||| ||||| ||||||||||| |||||||||    
T  1678726 acacatgtagttacatttaatcactttcattttctcaaattatta 1678682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 19176693 - 19176649
Alignment:
Q  197 acattcaatcattttcattttcttaaattattactagtgtctaca 241  Q
    ||||||||||| ||||||||||||||| |||||||  ||||||||    
T  19176693 acattcaatcactttcattttcttaaactattactgatgtctaca 19176649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 23817975 - 23818019
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattatt 228  Q
    |||||||||  ||| ||||||||| ||||||||||||||||||||    
T  23817975 gacacatgttattatattcaatcactttcattttcttaaattatt 23818019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 8013842 - 8013904
Alignment:
Q  182 ctgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgt 244  Q
    |||||||||||||||||||||||||| ||  ||||| | ||||||||||||||||||||||||    
T  8013842 ctgacacatgtggttacattcaatcacttatattttttcaaattattactagtgtctacatgt 8013904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 32862757 - 32862803
Alignment:
Q  178 gatactgacacatgtggttacattcaatcattttcattttcttaaat 224  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  32862757 gatactgacacacgtggttacattcaatcactttcattttcttaaat 32862803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 2468480 - 2468535
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattattactagtgtctac 240  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| | |||||||    
T  2468480 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctac 2468535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 34443049 - 34443096
Alignment:
Q  183 tgacacatgtggttacattcaatcattttcattttcttaaattattac 230  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  34443049 tgacacatgtggttacattcaatcactttcactttctcaaattattac 34443096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 3964293 - 3964347
Alignment:
Q  186 cacatgtggttacattcaatcattttcattttcttaaattattactagtgtctac 240  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| | ||||||||    
T  3964293 cacatgtggttatgttcaatcattttcatttccttaaattattattggtgtctac 3964347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 34406480 - 34406440
Alignment:
Q  187 acatgtggttacattcaatcattttcattttcttaaattat 227  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  34406480 acatatggttacattcaatcactttcattttcttaaattat 34406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 4382902 - 4382841
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    ||||||||| |||| ||||||| | |||||||||||| ||||||||   |||||||||||||    
T  4382902 gacacatgtagttaaattcaattactttcattttctttaattattatcggtgtctacatgtc 4382841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 8805967 - 8806012
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    ||||||||||||| |||||||||| ||||| ||||| |||||||||    
T  8805967 gacacatgtggtttcattcaatcactttcaatttctcaaattatta 8806012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 34923262 - 34923229
Alignment:
Q  133 tgtaacatcgacacttcatattgaagacgtgtct 166  Q
    |||||||||||||||||||||||||| |||||||    
T  34923262 tgtaacatcgacacttcatattgaaggcgtgtct 34923229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 4240917 - 4240965
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    ||||||||||| | |||||||  |||| |||||||||||||||||||||    
T  4240917 actgacacatgcgattacatttcatcactttcattttcttaaattatta 4240965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 29236301 - 29236253
Alignment:
Q  194 gttacattcaatcattttcattttcttaaattattactagtgtctacat 242  Q
    |||||||||||||| ||  ||||||| ||||||||| ||||||||||||    
T  29236301 gttacattcaatcacttctattttctcaaattattattagtgtctacat 29236253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 34443447 - 34443475
Alignment:
Q  189 atgtggttacattcaatcattttcatttt 217  Q
    |||||||||||||||||||||||||||||    
T  34443447 atgtggttacattcaatcattttcatttt 34443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 34444749 - 34444781
Alignment:
Q  178 gatactgacacatgtggttacattcaatcattt 210  Q
    ||||| |||||||||||||||||||||||||||    
T  34444749 gatacagacacatgtggttacattcaatcattt 34444781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 37844249 - 37844187
Alignment:
Q  187 acatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggta 249  Q
    |||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||    
T  37844249 acatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta 37844187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 5453770 - 5453707
Alignment:
Q  177 cgatactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctac 240  Q
    |||||||||| |||||||||| ||||||||| || ||||||||||||||| ||| |||||||||    
T  5453770 cgatactgactcatgtggttatattcaatcacttccattttcttaaattactaccagtgtctac 5453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 30289869 - 30289802
Alignment:
Q  178 gatactgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    ||||||||||||  |||||||||||||| | |  ||||||||||||||||||| ||||||||||||||    
T  30289869 gatactgacacacatggttacattcaattactcacattttcttaaattattaccagtgtctacatgtc 30289802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 17386529 - 17386478
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattattactagtgt 236  Q
    |||||||| ||||||||||||||||| ||||||| |||||| || |||||||    
T  17386529 acacatgtagttacattcaatcatttccattttcataaattgttgctagtgt 17386478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 39941343 - 39941300
Alignment:
Q  183 tgacacatgtggttacattcaatcattttcattttcttaaatta 226  Q
    ||||||||||||||||||||||||  || |||||||||||||||    
T  39941343 tgacacatgtggttacattcaatcgcttacattttcttaaatta 39941300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 16742923 - 16742875
Alignment:
Q  187 acatgtggttacattcaatcattttcattttcttaaattattactagtgtc 237  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  16742923 acatgtggttac-ttcaatcattt-cattttctcaaattattactagtgtc 16742875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 22877148 - 22877112
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcatttt 217  Q
    ||||||||||||||||||||||||| | |||||||||    
T  22877148 actgacacatgtggttacattcaattactttcatttt 22877112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 34166171 - 34166112
Alignment:
Q  189 atgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtcggt 248  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |  |||||||||||||||    
T  34166171 atgtgattacattcaatcaatttcattttcttaaattattattgatgtctacatgtcggt 34166112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 14332155 - 14332205
Alignment:
Q  173 gagacgatactgacacatgtggttacattcaatcattttcattttcttaaa 223  Q
    ||||| ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  14332155 gagacaatactcacacatgtggttacattcaatcacttttattttcttaaa 14332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 26208009 - 26208062
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattattactagt 234  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||||||| ||||    
T  26208009 actgacacatgtggttacattcaaacacttttattttctcaaattattaatagt 26208062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 29587734 - 29587687
Alignment:
Q  183 tgacacatgtggttacattcaatcattttcattttcttaaattattac 230  Q
    ||||| ||||||||||||| ||||| || |||||||||||||||||||    
T  29587734 tgacatatgtggttacatttaatcacttccattttcttaaattattac 29587687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 35819031 - 35818985
Alignment:
Q  193 ggttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    ||||| ||||||||||||| ||||| |||||||||||| ||||||||    
T  35819031 ggttatattcaatcatttttatttttttaaattattacaagtgtcta 35818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 39828517 - 39828465
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattattactagtgtct 238  Q
    ||||||||||||||||||||| | |||||| |||| |||||||||| |||||||    
T  39828517 acacatgtggttacattcaatta-tttcatattctcaaattattacaagtgtct 39828465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 13049986 - 13050038
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgt 236  Q
    |||||||||| ||||||||| | | ||| ||||||||||||||||||| ||||    
T  13049986 gacacatgtgattacattcattgacttttattttcttaaattattactggtgt 13050038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 27976420 - 27976384
Alignment:
Q  194 gttacattcaatcattttcattttcttaaattattac 230  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  27976420 gttacgttcaatcactttcattttcttaaattattac 27976384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 17105315 - 17105260
Alignment:
Q  184 gacacatgtggttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    |||| ||| ||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  17105315 gacaaatgaggttacattcaatcacttttattttcttaaattattattagtgtcta 17105260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 35335657 - 35335599
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    |||| |||| |||||| |||| ||||| ||||||||||| |||||||||||||||||||    
T  35335657 actgccacaagtggttgcatttaatcactttcattttctcaaattattactagtgtcta 35335599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 9498877 - 9498919
Alignment:
Q  195 ttacattcaatcattttcattttcttaaattattactagtgtc 237  Q
    ||||||||||||| ||||||||||| | |||||||||||||||    
T  9498877 ttacattcaatcactttcattttctcatattattactagtgtc 9498919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 48448445 - 48448388
Alignment:
Q  188 catgtggttacattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    ||||||||| || ||||||||||  ||||||| |||||| ||||| ||||||||||||    
T  48448445 catgtggttgcaatcaatcatttcaattttctcaaattactactattgtctacatgtc 48448388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  194 gttacattcaatcattttcattttcttaaattattac 230  Q
    |||||||||||| | ||||||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 35990529 - 35990576
Alignment:
Q  181 actgacacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||||||||    
T  35990529 actgacacatgtggttacattcagttatttt-attttctcaaattatta 35990576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 42945063 - 42945011
Alignment:
Q  194 gttacattcaatcattttcattttcttaaattattactagtgtctacatgtcg 246  Q
    |||||||||| | | ||||||||||| ||||||||| ||| ||||||||||||    
T  42945063 gttacattcactaactttcattttctcaaattattagtagcgtctacatgtcg 42945011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 6632470 - 6632426
Alignment:
Q  187 acatgtggttacattcaatcattttcattttcttaaattattact 231  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||    
T  6632470 acatgtggttacattcaatcacttttattttcttaatttattact 6632426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 35108021 - 35108067
Alignment:
Q  198 cattcaatcattttcattttcttaaattattactagtgtctacatgtc 245  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  35108021 cattcaattattttcattttcttaaattattattagtgt-tacatgtc 35108067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 25452218 - 25452173
Alignment:
Q  194 gttacattcaatcattttcattttcttaaattattactagtgtcta 239  Q
    |||||||||||||| || ||||||||| |||||||||| |||||||    
T  25452218 gttacattcaatcagttccattttcttgaattattacttgtgtcta 25452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 34399904 - 34399948
Alignment:
Q  185 acacatgtggttacattcaatcattttcattttcttaaattatta 229  Q
    |||||| || |||||||||||||||| |||||||| |||||||||    
T  34399904 acacatatgattacattcaatcatttacattttctcaaattatta 34399948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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