View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0667_low_11 (Length: 393)
Name: NF0667_low_11
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 6586293 - 6586656
Alignment:
| Q |
21 |
atcatcaagtaccaaaactccaagctgccatcacattttcaaaattcaattcaacataaagtttccattcaaatattaattaagtcgaattgaaaatatg |
120 |
Q |
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| T |
6586293 |
atcatcaagtaccaaaactccaagctgccatcacattttcaaaattcaattcaacataaagtttccattcaaatattaattaagtcgaattgaaaatatg |
6586392 |
T |
|
| Q |
121 |
aagtttgtgaaaatataccataacataacagctgaagctaaagaaagtttcaaaaaattaaacaaatctgcaaaagctagccatgagaatccactccaag |
220 |
Q |
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| T |
6586393 |
aagtttgtgaaaatataccataacataacagctgaagctaaagaaagtttcaaaaaattaaacaaatctgcaaaagctagccatgagaatccactccaag |
6586492 |
T |
|
| Q |
221 |
caccatctgatttggtgatgaaaatgtacaaaagttgaccaatgacaatcaaccaccatgatgtgtttagaataattgcagctccaactaagccccaatt |
320 |
Q |
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| T |
6586493 |
caccatctgatttggtgatgaaaatgtacaaaagttgaccaatgacaatcaaccaccatgatgtgtttagaataattgcagctccaactaagccccaatt |
6586592 |
T |
|
| Q |
321 |
aagtttcaatattagaagccaactaagaggtacatgtaacactaaaacacctgatgatgtccat |
384 |
Q |
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| T |
6586593 |
tagtttcaatattagaagccaactaagaggtacatgtaacactaaaacacctaatgatatccat |
6586656 |
T |
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