View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0667_low_17 (Length: 250)
Name: NF0667_low_17
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_17 |
 | |
|
| [»] scaffold0750 (1 HSPs) |
| | |
|
| [»] scaffold0124 (1 HSPs) |
| | |
|
| [»] scaffold0351 (1 HSPs) |
| | |
|
| [»] scaffold0036 (2 HSPs) |
| | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8130002 - 8130239
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8130002 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgctgcacttcctgattaataagcatagcatat |
8130101 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8130102 |
gccccgctgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgcaaagaaatgttagcaagtaataacctacact |
8130201 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8130202 |
ctgctaggagctcctcctcccacacccacaaactccta |
8130239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6985953 - 6986190
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
6985953 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctactgcacttcctgattgataagcatagcatat |
6986052 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|||||| | |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6986053 |
gccccgctaactgtgcaaccttgactagggttcggttgccactgccacacatcataggaaagaggctgcaaagaaacgttagcaagtaataacctacact |
6986152 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6986153 |
ctgctaggagctcctcctcccacacccacaatctccta |
6986190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 14854091 - 14854183
Alignment:
| Q |
139 |
ccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaa |
231 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||| ||| |||||| | |||||||| ||| || |||||||||||||||||||| |
|
|
| T |
14854091 |
ccactgccacacatcataagaaagagactgcaaagaaacattaagaagtaacattctacactcctctaaaagatcctcctcccacacccacaa |
14854183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 17620279 - 17620337
Alignment:
| Q |
179 |
ttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctcct |
237 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||| ||||||| ||||||| ||||| |
|
|
| T |
17620279 |
ttagcaagtaacaacctacactctgctaccaactccttctcccacgcccacaacctcct |
17620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0750 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0750
Description:
Target: scaffold0750; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6102 - 6348
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6102 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgctgcacttcctgattaataagcatagcatat |
6201 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6202 |
accccgctgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctacaaagaaacattagcaagtaataacctacact |
6301 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcctatgctactgc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6302 |
ctgctaggagctcctcctcccacacccacaatctcctacgccactgc |
6348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 22464 - 22710
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22464 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgctgcacttcctgattaataagcatagcatat |
22563 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
22564 |
accccgctgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctacaaagaaacattagcaagtaataacctacact |
22663 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcctatgctactgc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22664 |
ctgctaggagctcctcctcccacacccacaatctcctacgccactgc |
22710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13415734 - 13415971
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
13415734 |
ccaagaaaaaatagacaccttaaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgctgcacttcctgattggtaagcatagcatat |
13415833 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13415834 |
gccccacgaactgtgtacccttgactaggatccggttgccactgccacacatcataggaaagagactgcaaagaaacgttagcaagtaataacctacact |
13415933 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
| | ||| |||| ||||||||||||||||| |||||| |
|
|
| T |
13415934 |
ccacaaggggctcttcctcccacacccacaaactccta |
13415971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6727866 - 6727632
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||| | | ||||||||| |||||| ||||||| |
|
|
| T |
6727866 |
ccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttcacaaagaccattctgctgctcctcctgattagtaagcaaagcatat |
6727767 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
| ||| | |||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6727766 |
gtcccacgaattgtgtacccttgactagggtccgggtgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacact |
6727667 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctc |
235 |
Q |
| |
|
| || || ||||||||||||||||||||||||||| |
|
|
| T |
6727666 |
ccgcaagaagctcctcctcccacacccacaatctc |
6727632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2207911 - 2207676
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||||||||| || || ||||| | ||||||| | | || ||| || |||| | |||||| |
|
|
| T |
2207911 |
ccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaaccaaatcctcacaaaggctatcctgctgctcctcttgagtagtaagtaaagcataa |
2207812 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2207811 |
gcaccacgaactgtgtacccttgaccagggtccggttgccactgccacacatcataagaaagaggctgtaaagaaacattagcaagtaataacctacact |
2207712 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| | ||||| ||||||||||| ||||||| |||| |
|
|
| T |
2207711 |
ccacaaggaggtcctcctcccatgcccacaacctcc |
2207676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27951508 - 27951439
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgc |
70 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27951508 |
ccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgc |
27951439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 1468184 - 1468279
Alignment:
| Q |
138 |
gccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgc--taggagctcctcctcccacacccacaa |
231 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| | || |||||| |||||||| |||||||| |
|
|
| T |
1468184 |
gccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctctataagagctcttcctcccaaacccacaa |
1468279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 44029157 - 44029072
Alignment:
| Q |
139 |
ccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccaca |
224 |
Q |
| |
|
||||||||| |||||| | ||||||||||| || ||||| | || ||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
44029157 |
ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacactccgctaaaagatcctcctcccaca |
44029072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22877554 - 22877360
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||| |
|
|
| T |
22877554 |
ccaagcaaaaatagacaccttaagggaaacatgtttgtgccaaacccattcttcgcaaagaccatcctactgcacttcctaattgataagcatagcatat |
22877455 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacct |
195 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22877454 |
gccccgcgaactgtgtaaccttgactaggatccggttgccactgccacacatcatagaaaagaggctgcaaagaaacgttagcaagtaataacct |
22877360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40688118 - 40688351
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| | | | |||||| |||||| ||||||| |
|
|
| T |
40688118 |
ccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttcacaaagactatcctgctgctccttttgattagtaagcaaagcatat |
40688217 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||||||| |
|
|
| T |
40688218 |
gctccacgaactgtgtacccttgactagggtccggttgccactgccacacatcataagaaagaggctgcaatgaaacattaacaagtaataacctacact |
40688317 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatct |
234 |
Q |
| |
|
| || || |||||||||||||||||||||||||| |
|
|
| T |
40688318 |
ccgcaagaagctcctcctcccacacccacaatct |
40688351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19163265 - 19163031
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||||||||| | | || |||| | |||||| |||||| |
|
|
| T |
19163265 |
ccaagcaaaaatagacac-ttaaggggaacctgtttgtgccaaaccaaatcttcacaaagaccatcctgctgctcctcttgatcagtaagcaaagcataa |
19163167 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || ||||||||| ||||| | ||| |||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
19163166 |
gctccacggactgtgtacccttgacaaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacattagcaagtaataacctacact |
19163067 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| || || |||| ||||||||| ||||||| |||| |
|
|
| T |
19163066 |
ccgcaagaagcttctcctcccatgcccacaacctcc |
19163031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 54684786 - 54684891
Alignment:
| Q |
126 |
tagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacac |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||| ||| | ||||||| |||||| |
|
|
| T |
54684786 |
taggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaatttcctccttccacac |
54684885 |
T |
|
| Q |
226 |
ccacaa |
231 |
Q |
| |
|
|||||| |
|
|
| T |
54684886 |
ccacaa |
54684891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 43127542 - 43127442
Alignment:
| Q |
138 |
gccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctcct |
237 |
Q |
| |
|
|||||| |||||||||| | |||||| ||| |||||||| | ||||||||||||||||||||| |||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
43127542 |
gccactaccacacatcaaaagaaagactctgcaaagaaacatcagcaagtaataacctacactcctctagtaactcttcctcccacacccacaaactcct |
43127443 |
T |
|
| Q |
238 |
a |
238 |
Q |
| |
|
| |
|
|
| T |
43127442 |
a |
43127442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 7098676 - 7098773
Alignment:
| Q |
144 |
gccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacac-tctgctaggagctcctcctcccacacccacaatctcctatgc |
241 |
Q |
| |
|
||||||||||||| ||||||| ||| | |||||| | | ||||||||||||||| ||| |||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
7098676 |
gccacacatcatatgaaagagtctgcagagaaacatcaagcagtaataacctacacctct-ctagtaactcctcctcccacacccacaaactcctatgc |
7098773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 28713229 - 28713178
Alignment:
| Q |
179 |
ttagcaagtaataacctacactctgctaggagctcctcctcccacacccaca |
230 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
28713229 |
ttagcaagtaacaacctacactctgctaccaactcctcctcccacgcccaca |
28713178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35837260 - 35837497
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| | ||||||| || |||||||||| ||||||||||||| |
|
|
| T |
35837260 |
ccaagcaaaaatagacaccttaagcggaacctgtttgtgccaaaccaattcatcgcaaagtctatcctgctgcaattcctgattagtaagcatagcatac |
35837359 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| ||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
35837360 |
gcaccacgaactgtgtacccttgactaggatccggttgccactaccacacatcataagaaagaggctgcaaagaaacgatagcaagtaataacctacact |
35837459 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
35837460 |
cctcaaggagctcctcctcccacacccacaaactccta |
35837497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36255830 - 36256065
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||| || ||| | || |||||| |||||| |||||| |
|
|
| T |
36255830 |
ccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttcacaaagactatcttgagactcctcttgattagtaagcaaagcataa |
36255929 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
36255930 |
gcgccacgaactgtgtacccttgactagggtccggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacact |
36256029 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| || || ||||||||||||||| ||||||| |||| |
|
|
| T |
36256030 |
ccgcaagaagctcctcctcccacgcccacaacctcc |
36256065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 23923074 - 23923136
Alignment:
| Q |
175 |
aacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctcct |
237 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| | ||||||||||||||||||||| ||||| |
|
|
| T |
23923074 |
aacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcct |
23923136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4310923 - 4310688
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||| | | || |||||| |||||| |||||| |
|
|
| T |
4310923 |
ccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattctttacaaagactatcctgctcctcctcttgattagtaagcaaagcataa |
4310824 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4310823 |
gctccacgaactgtgtacccttgactagggtccggttgccactgccacacatcataagaaataggctgcaaagaaatattagcaagtaataacctacact |
4310724 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| || || ||||||||||||||||||||||| |||| |
|
|
| T |
4310723 |
ccgcaagaagctcctcctcccacacccacaaactcc |
4310688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 42649397 - 42649500
Alignment:
| Q |
128 |
gggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacaccc |
227 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||| |||| ||||| |||| ||| |||| |
|
|
| T |
42649397 |
gggtctggatgccattgccacacatcataagaaagaggctgcaaagaaacatcagcaagtaataacctacactcctctagaagctcttccttccaaaccc |
42649496 |
T |
|
| Q |
228 |
acaa |
231 |
Q |
| |
|
|||| |
|
|
| T |
42649497 |
acaa |
42649500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35029273 - 35029319
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaacca |
47 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
35029273 |
ccaagcaaaaatagaaaccttaagtggaacatgtttatgccaaacca |
35029319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12331907 - 12331951
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaac |
45 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
12331907 |
ccaagcaaaaattgagaccttaagtggaacatgtttgtgccaaac |
12331951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 33694839 - 33694883
Alignment:
| Q |
179 |
ttagcaagtaataacctacactctgctaggagctcctcctcccac |
223 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
33694839 |
ttagcaagtaacaacctacactctgctaccaactcctcctcccac |
33694883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 37719040 - 37719140
Alignment:
| Q |
143 |
tgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctcctatgct |
242 |
Q |
| |
|
||||| ||| |||| ||||||||||| |||||||| | | || |||||||| |||||| |||| || |||||||||||| |||||| |||||| ||| |
|
|
| T |
37719040 |
tgccaaacaccatacgaaagaggctgcaaagaaacatcataaaataataaccgacactccgctaaaagatcctcctcccacgtccacaacctcctacgct |
37719139 |
T |
|
| Q |
243 |
a |
243 |
Q |
| |
|
| |
|
|
| T |
37719140 |
a |
37719140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45165648 - 45165413
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||||| | | || |||||| |||||| |||||| |
|
|
| T |
45165648 |
ccaagcaaaaataaacaccttaaggggaacctctttgtgccaaaccaaatcttcacaaagactatcctgctgctcctcttgattagtaagcaaagcataa |
45165549 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| ||||| | |||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
45165548 |
gctccacgaactgtgtacccttgacaagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacact |
45165449 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| || || |||||||||| ||| ||||||| |||| |
|
|
| T |
45165448 |
ccgcaagaagctcctccttccatgcccacaacctcc |
45165413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 39694522 - 39694757
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||||||||| || || ||||| | ||||||| | | || ||| | |||| | |||||| |
|
|
| T |
39694522 |
ccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaaccaaatcctcacaaaggctatcctgctgctcctcttgagaagtaagtaaagcataa |
39694621 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || | |||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
39694622 |
gcaccacgaattgtgtacccttgaccagggtccggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacact |
39694721 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| | ||||| ||||||||||| ||||||| |||| |
|
|
| T |
39694722 |
ccacaaggaggtcctcctcccatgcccacaacctcc |
39694757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 6343599 - 6343499
Alignment:
| Q |
131 |
tccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccaca |
230 |
Q |
| |
|
||||||||||| ||||||| |||| | ||||||||||| |||||||| |||| |||||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
6343599 |
tccggttgccattgccacatatcaaaagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccacacccaca |
6343500 |
T |
|
| Q |
231 |
a |
231 |
Q |
| |
|
| |
|
|
| T |
6343499 |
a |
6343499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 551516 - 551405
Alignment:
| Q |
127 |
agggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacc |
226 |
Q |
| |
|
|||||||||| ||||||||| |||||| | ||| ||||||| |||||||| | || |||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
551516 |
agggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaaacatcagaaagtaataacctacactccgctaaaagttcctcctcccacacc |
551417 |
T |
|
| Q |
227 |
cacaatctccta |
238 |
Q |
| |
|
||||| |||||| |
|
|
| T |
551416 |
cacaacctccta |
551405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 28173896 - 28173829
Alignment:
| Q |
170 |
aaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctcct |
237 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||| |||| | ||||||||||||| ||||||||||||| |
|
|
| T |
28173896 |
aaagtaacattagcaagtaacaacctacactccgctaccaactcctcctcccacgcccacaatctcct |
28173829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13081 - 12846
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgcgacacttcctgattaataagcatagcatat |
100 |
Q |
| |
|
|||||| |||||||| ||||| ||||| || ||||||||||||||||| || || |||||| |||||| | | || |||||| | |||| |||||| |
|
|
| T |
13081 |
ccaagcgaaaatagagaccttaagggggacctgtttgtgccaaaccaaatcgtcaaaaagactatcctgttgctcctcttgattagttagcaaagcataa |
12982 |
T |
|
| Q |
101 |
gccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacact |
200 |
Q |
| |
|
|| || |||||||| |||| | ||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
12981 |
gctccacgaactgtgtaccctttacaaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtactagcctacact |
12882 |
T |
|
| Q |
201 |
ctgctaggagctcctcctcccacacccacaatctcc |
236 |
Q |
| |
|
| || | |||||||||||||| ||||||| |||| |
|
|
| T |
12881 |
ccgccaaaagctcctcctcccaagcccacaacctcc |
12846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 15602505 - 15602605
Alignment:
| Q |
131 |
tccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15602505 |
tccggttgccactgccacacatcataagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccacacccaca |
15602604 |
T |
|
| Q |
231 |
a |
231 |
Q |
| |
|
| |
|
|
| T |
15602605 |
a |
15602605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 18588541 - 18588649
Alignment:
| Q |
139 |
ccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||| ||| |||||| ||||||||||| ||| || |||||||||||||||||||| |||||| |
|
|
| T |
18588541 |
ccactaccacacatcataagaaagaggctgcaaagaaacattaagaagtaacaacctacactcctctaaaagatcctcctcccacacccacaacctccta |
18588640 |
T |
|
| Q |
239 |
tgctactgc |
247 |
Q |
| |
|
|| ||||| |
|
|
| T |
18588641 |
cgccactgc |
18588649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 7956619 - 7956527
Alignment:
| Q |
139 |
ccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaa |
231 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||| ||| |||||| |||||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
7956619 |
ccactgccacacatcataagaaagagactgcaaagaaacattatgaagtaacaacctagactcctctaaaagatcctcctcccacacccacaa |
7956527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 17509473 - 17509571
Alignment:
| Q |
140 |
cactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacacccacaatctccta |
238 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| ||||||| | | ||||||||||||||||| |||| | ||||||||||||||||||||| |||||| |
|
|
| T |
17509473 |
cactgtcacacatcatatgaaagagtctgcaaagaaaaatcatggagtaataacctacactcctctagtaactcctcctcccacacccacaaactccta |
17509571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 30712843 - 30712738
Alignment:
| Q |
126 |
tagggtccggttgccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccacac |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
30712843 |
taggatccggttgccactgccacacatcataagaaagaggctgcagagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccacac |
30712744 |
T |
|
| Q |
226 |
ccacaa |
231 |
Q |
| |
|
|||||| |
|
|
| T |
30712743 |
ccacaa |
30712738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 9991269 - 9991332
Alignment:
| Q |
158 |
gaaagaggctgtaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctccc |
221 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||||| ||| |||| | ||| ||||||| |
|
|
| T |
9991269 |
gaaagaggctgcaaagaaacattagcaagtaatatcctacaatcttctagtaactcttcctccc |
9991332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45270292 - 45270339
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa |
48 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
45270292 |
ccaagcaaaaatagagaccttaagcggaacatggttgtgccaaaccaa |
45270339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44898 - 44829
Alignment:
| Q |
1 |
ccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaattcttcgcaaagaccatcctgc |
70 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44898 |
ccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaaccaattcttcgcaaataccatcctgc |
44829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 43876 - 43788
Alignment:
| Q |
73 |
cacttcctgattaataagcatagcatatgccccgttgactgtgtaaccttggctagggtccggttgccactgccacacatcataggaaa |
161 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| | || ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43876 |
cacttcatgattggtaagcataacatatgccctataaacagtgtaaccttgactaggatccggttgccactgccacacatcataggaaa |
43788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 87153 - 87094
Alignment:
| Q |
139 |
ccactgccacacatcataggaaagaggctgtaaagaaacgttagcaagtaataacctaca |
198 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||| | ||||||||||| |||||| |
|
|
| T |
87153 |
ccactgccaaacatcataagaaagaggctgcaaagaaacatcagcaagtaataccctaca |
87094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 87290 - 87248
Alignment:
| Q |
2 |
caagcaaaaatagacaccttgaggggaacatgtttgtgccaaa |
44 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
87290 |
caagcaaaaatagacaccttaagcggaacctgtttgtgccaaa |
87248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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