View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0667_low_18 (Length: 238)
Name: NF0667_low_18
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_18 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 24759770 - 24759983
Alignment:
| Q |
25 |
catggccttgcaactacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccatcgtc |
124 |
Q |
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| T |
24759770 |
catggccttgcagctacggtggtctcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc |
24759869 |
T |
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| Q |
125 |
tattcccccgccaccgtctgctgcatcgtatcgtcacaacaaacaacataatcaatttgtgagttgtctttccctctatctatccacgatcatgctgccc |
224 |
Q |
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| T |
24759870 |
gactcccccgccaccgtctactgcatcgtatcgtcacaacaaacaacataatcaattggtgagttgtctttccctctatctatccacgattatgctgccc |
24759969 |
T |
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| Q |
225 |
ctaccatggccaac |
238 |
Q |
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| T |
24759970 |
ctaccatggccaac |
24759983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 52127205 - 52127418
Alignment:
| Q |
25 |
catggccttgcaactacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccatcgtc |
124 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52127205 |
catggccttgcagctacggtggtctcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc |
52127304 |
T |
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| Q |
125 |
tattcccccgccaccgtctgctgcatcgtatcgtcacaacaaacaacataatcaatttgtgagttgtctttccctctatctatccacgatcatgctgccc |
224 |
Q |
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| T |
52127305 |
gactcccccgccaccgtctactgcatcgtatcgtcacaacaaacaacataatcaattggtgagttgtctttccctctatctatccacgattatgctgccc |
52127404 |
T |
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| Q |
225 |
ctaccatggccaac |
238 |
Q |
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|||||||||||||| |
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| T |
52127405 |
ctaccatggccaac |
52127418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 27843504 - 27843292
Alignment:
| Q |
38 |
ctacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccatcgtctattcccccgcca |
137 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||| | | |||||| ||| |
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| T |
27843504 |
ctacggtggcctcccaacactctgttgcttttcttttccactccctccctcacctctctcagttccggcacaacccttgccgtcgccgactccccctcca |
27843405 |
T |
|
| Q |
138 |
ccgtctgctgcatcgtatcgtcacaacaaacaacataa--tcaattt-----------gtgagttgtctttccctctatctatccacgatcatgctgccc |
224 |
Q |
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|||||| |||||||||||||||||||||||| |||||| ||| ||| |||| ||| |||||||||||||||||||||||||||| |||| |
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| T |
27843404 |
ccgtctactgcatcgtatcgtcacaacaaac-acataacttcattttctattgcctcagtgaattgactttccctctatctatccacgatcatgccgccc |
27843306 |
T |
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| Q |
225 |
ctaccatggccaac |
238 |
Q |
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|||||||||||| |
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| T |
27843305 |
tcaccatggccaac |
27843292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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