View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0667_low_2 (Length: 554)
Name: NF0667_low_2
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 195 - 457
Target Start/End: Complemental strand, 9571793 - 9571531
Alignment:
| Q |
195 |
cttcctagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctcnnnnnnngcagaagccggcg |
294 |
Q |
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| T |
9571793 |
cttcatagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctctttttttgcagaagccggcg |
9571694 |
T |
|
| Q |
295 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571693 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
9571594 |
T |
|
| Q |
395 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaatt |
457 |
Q |
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| T |
9571593 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaatt |
9571531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 9571926 - 9571853
Alignment:
| Q |
62 |
gaagaatatagctgttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
135 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571926 |
gaagaaaatagctgttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
9571853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 3522085 - 3522115
Alignment:
| Q |
105 |
aactatgtagcaccgacaattcagattgaag |
135 |
Q |
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| T |
3522085 |
aactatgtagcaccgacaattcagattgaag |
3522115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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