View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0667_low_3 (Length: 536)
Name: NF0667_low_3
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_3 |
 | |
|
| [»] scaffold0250 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 226 - 532
Target Start/End: Complemental strand, 17778269 - 17777964
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17778269 |
agatacaaatgcaatattgatgcatccttttcgaagcacctgaacaaggttggattatgtatgtgtattagagatgaacatggtacttttgtccttgcca |
17778170 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17778169 |
aaactgattggtttagtcccatatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgcatgagctcaacttgggacctat |
17778070 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
525 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17778069 |
tgactttgagatggatgcgaagagagtggtggatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccaaaattataaaactct |
17777971 |
T |
|
| Q |
526 |
ctttagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
17777970 |
ctttagg |
17777964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 226 - 531
Target Start/End: Original strand, 32663381 - 32663685
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
32663381 |
agatacaaatgcaatattgatgcatcctttttgaagcacctgaacaagattggattagatatgagtattagagatgaacatggtacttttgtccttacca |
32663480 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
32663481 |
aaactgattggtttagtcccatatgtgaagttcatattggagaagcttttgggttgatttcaacactagagtgggtgcatgagctcaacttgggatctat |
32663580 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
525 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32663581 |
tgactttgagatggatgcgaagagagtggtggatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
32663679 |
T |
|
| Q |
526 |
ctttag |
531 |
Q |
| |
|
|||||| |
|
|
| T |
32663680 |
ctttag |
32663685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 23059966 - 23059728
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaac--gcaggtgttccaacgtgcaacccatgtatttgaagaa |
117 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| | || ||||||| | ||||||||||| |||||| |||||||| |
|
|
| T |
23059966 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaacttgaga-caaatttgcaggtgcttcaacgtgcaactcatgtacttgaagaa |
23059868 |
T |
|
| Q |
118 |
tggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaag |
217 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| | ||| | | ||||||||| |||| | | | |||||| ||||||||||||||||||||| | |
|
|
| T |
23059867 |
tggcaaacagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttcggtctttgagacaagaggaagatgtttggaagaaaccgg |
23059768 |
T |
|
| Q |
218 |
cacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
23059767 |
cacctggcaggtataaatgcaacattgatgcatccttttc |
23059728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 53708524 - 53708415
Alignment:
| Q |
268 |
aacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgccaaaactgattggtttagtcccacatgtgaagttcatattgga |
366 |
Q |
| |
|
||||||||||| |||| || ||||| |||||||| ||| ||||| | |||| | || |||||||| ||||||||||| | ||||||||||||||| ||| |
|
|
| T |
53708524 |
aacaaggttggtataggaatatgtataagagatgacaca-ggtacgtttgtcttagctaaaactgaatggtttagtccgatatgtgaagttcatatagga |
53708426 |
T |
|
| Q |
367 |
gaagctcttgg |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
53708425 |
gaagctcttgg |
53708415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 226 - 532
Target Start/End: Original strand, 20491191 - 20491496
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20491191 |
agatacaaatgcaatattgatgcatccttttcgaagcacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttttgtccttgcca |
20491290 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||| |
|
|
| T |
20491291 |
aaactgattggtttagtcccatatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgcgtgagctcaatttgggacctat |
20491390 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
525 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20491391 |
tgactttgagatggatgcgaagagagtggttgatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccacaattgtaaaactct |
20491489 |
T |
|
| Q |
526 |
ctttagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
20491490 |
ctttagg |
20491496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 27877185 - 27877425
Alignment:
| Q |
17 |
atcatgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaacgcaggtgttccaacgtgcaacccatgtatttgaaga |
116 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877185 |
atcatgtggagtctataaatatgtagaaacttgaaactttggaagcaacaacttgagatcgaccgcaggtgttccaacgtgcaacccatgtatttgaaga |
27877284 |
T |
|
| Q |
117 |
atggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaa |
216 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
27877285 |
atggcgaacaacccaaagaattagatcaagcagcaacactcaatctacaactccacaagttcagccatccagacaagaggaagatgtttggaagaaacca |
27877384 |
T |
|
| Q |
217 |
gcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877385 |
gcacctggcagatacaaatgcaatattgatgcatccttttc |
27877425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 10395984 - 10395746
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| |||||||||| |||| ||| |||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
10395984 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaactcgagaccgactcgcaggtgtttcaacgtgcaacccatgtacttgaagaat |
10395885 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| | |||||| | |||||| ||||||||||| |||||| ||||||||||||||||||||| || |
|
|
| T |
10395884 |
ggtgaacagcccaaagaattagatccagcagcagtaatcaatccataactccgcaagttcagcctatgagacaagaggaagatgtttggaagaaaccggc |
10395785 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| | | | || |||||||| |||||||| |||||||| |
|
|
| T |
10395784 |
acctaacgggtataaatgcaacattgatgcttccttttc |
10395746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 377
Target Start/End: Original strand, 5212793 - 5212943
Alignment:
| Q |
227 |
gatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||| ||||||||||| || || || || || || ||| | ||||||||||| |||| || ||||| |||||||| ||| ||||| | |||| | || | |
|
|
| T |
5212793 |
gatataaatgcaatatcgacgcctctttctctaagcacttaaacaaggttggtataggaatatgtataagagatgacaca-ggtacgtttgtcttagcta |
5212891 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
5212892 |
aaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgg |
5212943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 24448937 - 24448984
Alignment:
| Q |
266 |
tgaacaaggttggattaggtatgtgtattagagatgaacatggtactt |
313 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
24448937 |
tgaataaggttggattagggatgtgtatgagagatgaaaatggtactt |
24448984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 371
Target Start/End: Original strand, 22069580 - 22069668
Alignment:
| Q |
283 |
ggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggtttagtcccacatgtgaagttcatattggagaagc |
371 |
Q |
| |
|
|||||||||||||| ||||| | || |||| ||||||||| ||||| || |||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
22069580 |
ggtatgtgtattagggatgatgaaggcacttttgtccttgctaaaacggaatggtttgaacccaagtgtgatgttcatattggagaagc |
22069668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 226 - 532
Target Start/End: Original strand, 27634831 - 27635136
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27634831 |
agatacaaatgcaatattgatgcatcctttttcaagcacctgaacaagattggattaggtatgtgtattagagatgaacatggtacttttgtccttgcca |
27634930 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
27634931 |
aaactgattggtttagtcccatatgtgaagttcatattgaagaagctcttgggttgatttcagcactagagtgggtgcatgagctcaacttgggacctat |
27635030 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
525 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27635031 |
tgactttgagatggatgtgaagagagtggtggatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
27635129 |
T |
|
| Q |
526 |
ctttagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
27635130 |
ctttagg |
27635136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 245 - 532
Target Start/End: Original strand, 10943931 - 10944217
Alignment:
| Q |
245 |
atgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggtttagtcc |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10943931 |
atgcatccttttcgaagcacctgaacaaggttggattaggtatgtgtattaaagatgaacatggtatttttgtccttgccaaaactgattggtttagtct |
10944030 |
T |
|
| Q |
345 |
cacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctattgactttgagatggacgcg |
444 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
10944031 |
catatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgtatgagctcaacttgggacctattaactttgagatggatgcg |
10944130 |
T |
|
| Q |
445 |
aagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagg |
532 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10944131 |
aagagagtggtggatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagg |
10944217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 245 - 532
Target Start/End: Original strand, 10949800 - 10950086
Alignment:
| Q |
245 |
atgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggtttagtcc |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10949800 |
atgcatccttttcgaagcacctgaacaaggttggattaggtatgtgtattaaagatgaacatggtatttttgtccttgccaaaactgattggtttagtct |
10949899 |
T |
|
| Q |
345 |
cacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctattgactttgagatggacgcg |
444 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
10949900 |
catatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgtatgagctcaacttgggacctattaactttgagatggatgcg |
10949999 |
T |
|
| Q |
445 |
aagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagg |
532 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10950000 |
aagagagtggtggatag-ttttttatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagg |
10950086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 226 - 532
Target Start/End: Original strand, 26370150 - 26370454
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
26370150 |
agatacaaatgcaatattgatgcatccttttcgaagcacctgaacaaggttggattaggtatatgtattagagatgaacatggtccttttgtccttgcca |
26370249 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
26370250 |
aaactgattggtttagttccatatgtgaag-tcatattggagaagctcttgggttgatttcagcactagagtggatgcatgtgctcaacttggaacctat |
26370348 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
525 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370349 |
tgactttgagatggatgcgaagagagtatcagatag-ttttttatcttcttgatatgatgttaccgaatttggtatcattatccaaaattgtaaaactct |
26370447 |
T |
|
| Q |
526 |
ctttagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
26370448 |
ctttagg |
26370454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 28590577 - 28590342
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| || |||||||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
28590577 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaacttgagacagattcgcaggtgcttcaacgtgcaactcatgtacttgaagaat |
28590478 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| | ||| ||| ||||||||| |||| | | | |||||| ||||||||||||||||||||| || |
|
|
| T |
28590477 |
ggcaaacagcccaaagaattagatcaagcagcagtaaccaaactataactccacaggttcggtctttgagacaagaggaagatgtttggaagaaaccggc |
28590378 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatcctt |
254 |
Q |
| |
|
|| |||||| || |||||||| || ||||||||||| |
|
|
| T |
28590377 |
acctggcaggtataaatgcaacatagatgcatcctt |
28590342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 377
Target Start/End: Complemental strand, 13912047 - 13911897
Alignment:
| Q |
227 |
gatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||| ||||||||||| || || || || || || ||| | ||||||||||| || | || ||||| |||||||| ||| ||||| |||||| | || | |
|
|
| T |
13912047 |
gatataaatgcaatatcgacgcctctttctctaagcacttaaacaaggttggtatatgaatatgtataagagatgacaca-ggtacgtctgtcttagcta |
13911949 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
13911948 |
aaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgg |
13911897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 226 - 531
Target Start/End: Original strand, 21338 - 21645
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
21338 |
agatataaatgcaatattgatgcatccttttcgaagcacctaaacaaggttggattaggtatgtgtattagagatgaacatggtacttttgttcttgcca |
21437 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctat |
425 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
21438 |
aaactgattggtttagtcccatatgtgaagttcatattggagaagctcttgagttgatttcaacactagagtgggtgcatgagctcaacttgggacctat |
21537 |
T |
|
| Q |
426 |
tgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggt---atcattatccaaaattgtaaaac |
522 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21538 |
tgactttgagatggatgcgaagagagtggtggatag-ttttttattttctcgacatgatgttaccgaatttggtatcatcattatccaaaattgtaaaac |
21636 |
T |
|
| Q |
523 |
tctctttag |
531 |
Q |
| |
|
|||| |||| |
|
|
| T |
21637 |
tctccttag |
21645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 240 - 532
Target Start/End: Original strand, 8087858 - 8088153
Alignment:
| Q |
240 |
tattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggttt |
339 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
8087858 |
tattgatgcatccttttcgaagcacctgaacaaggttggattaggcatgtatattagagatgaacatggtacttttgtccttgccaaaattgattgggtt |
8087957 |
T |
|
| Q |
340 |
agtcccacatgtgaagttcatattggagaagctcttgggttgatttcagcactaaagtgggtgcatgagctcaacttggaacctattgactttgagatgg |
439 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
8087958 |
agtcccatatgtgaagttcatattggagaagctcttggattgatttcatcactagagtgggtgcatgagctcaacatgggacctattgaccttgagatgg |
8088057 |
T |
|
| Q |
440 |
acgcgaagaga---gtggtgaatag-nnnnnnnatcttctcgacatgatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagg |
532 |
Q |
| |
|
| || |||||| |||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8088058 |
atgc-aagagagtggtggtggatagttttttttatcttatcgacatgatgttatcgaatttggtatcattatccaaaattgtaaaactctctttagg |
8088153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 47704360 - 47704125
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| || |||||||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
47704360 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaacttgagacagattcgcaggtgcttcaacgtgcaactcatgtacttgaagaat |
47704261 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| | ||| | | ||||||||| |||| | | | |||||| ||||||||||||||||||||| || |
|
|
| T |
47704260 |
ggcaaacagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttcggtctttgagacaagaggaagatgtttggaagaaaccggc |
47704161 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatcctt |
254 |
Q |
| |
|
|| |||||| || |||||||| || ||||||||||| |
|
|
| T |
47704160 |
acctggcaggtataaatgcaacatagatgcatcctt |
47704125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 26731387 - 26731258
Alignment:
| Q |
128 |
cccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagcacgtggcag |
227 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| | | ||||||||| |||| ||| | |||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
26731387 |
cccaaagaattagatcatgcagcagtaaccaacccataactccacaggttcggcctttgagacaagaggaagatgtttggaagaaaccggcacctggcag |
26731288 |
T |
|
| Q |
228 |
atacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| |||||||| ||||||||||| ||||| |
|
|
| T |
26731287 |
gtataaatgcaacattgatgcatcattttc |
26731258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 377
Target Start/End: Complemental strand, 37777119 - 37776985
Alignment:
| Q |
243 |
tgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggtttagt |
342 |
Q |
| |
|
||||||||| ||||| ||||| || || ||||||||| |||||||||| || ||||| | |||||| ||| | |||||| ||||||||| | ||||||| |
|
|
| T |
37777119 |
tgatgcatctttttcaaaacaacttaataaggttggaataggtatgtgcatcagagacaatcatggtgcttttctccttgtcaaaactgagtagtttagt |
37777020 |
T |
|
| Q |
343 |
cccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
|| | | |||||| |||||||||||||||||| |
|
|
| T |
37777019 |
ccaatctatgaagtatgtattggagaagctcttgg |
37776985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 45779541 - 45779593
Alignment:
| Q |
325 |
aaaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
45779541 |
aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgg |
45779593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 43640230 - 43640332
Alignment:
| Q |
268 |
aacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgccaaaactgattggtttagtcccacatgtgaagttcatattgga |
366 |
Q |
| |
|
||||||||||| |||| || ||||| |||||||| ||| ||||| | |||| | || |||||||| ||||||||||| | ||||||||||||||| ||| |
|
|
| T |
43640230 |
aacaaggttggtataggaatatgtataagagatgacaca-ggtacgtttgtcttagctaaaactgaatggtttagtccgatatgtgaagttcatatagga |
43640328 |
T |
|
| Q |
367 |
gaag |
370 |
Q |
| |
|
|||| |
|
|
| T |
43640329 |
gaag |
43640332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 32895502 - 32895743
Alignment:
| Q |
17 |
atcatgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32895502 |
atcatgtggagtctatggaaatgtagaaacctgaaactttggcagcaacaacttgaggccgactcgcaggtgtaccaacgtgcaacccatgtatttgaag |
32895601 |
T |
|
| Q |
116 |
aatggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaaca |
215 |
Q |
| |
|
||||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
32895602 |
aatggcgagcaacccaaaaaattagatcaagcagcagcactcaatctacaactccacaagttcagccttccagacaagaggaagatgtttggaagaaacc |
32895701 |
T |
|
| Q |
216 |
agcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32895702 |
agcacctggcagttacaaatgcaatattgatgcatccttttc |
32895743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 13104992 - 13104756
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaacgcaggtgttccaacgtgcaacccatgtatttgaagaatg |
119 |
Q |
| |
|
|||||||| || ||||||||| ||||| ||||||||||| |||||||| | |||| | | |||||||||| ||||||||||| ||| || |||||||||| |
|
|
| T |
13104992 |
atgtggagcctttggaaatgtcgaaacatgaaactttggcagcaacaattcgagacccatcgcaggtgtttcaacgtgcaactcatttacttgaagaatg |
13104893 |
T |
|
| Q |
120 |
gtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagca |
219 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||| ||||||||| | ||||||||| ||||| || | ||| || |||||||| ||||||||||| ||| |
|
|
| T |
13104892 |
gtgaacaacccaacgaattagatccagcagcaccactcaatccataactccacaggttcaacctttaagataagaggaagattgttggaagaaaccggca |
13104793 |
T |
|
| Q |
220 |
cgtggcagatacaaatgcaatattgatgcatcctttt |
256 |
Q |
| |
|
| | |||| || |||||||| |||||||||||||||| |
|
|
| T |
13104792 |
cctagcaggtataaatgcaacattgatgcatcctttt |
13104756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 377
Target Start/End: Complemental strand, 19110747 - 19110597
Alignment:
| Q |
227 |
gatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||| ||||||||||| ||||| || || || || ||| | ||||||||||| |||| || ||||| |||||||| ||| ||||| | |||| | || | |
|
|
| T |
19110747 |
gatataaatgcaatatcgatgcctctttctctaagcacttaaacaaggttggtataggaatatgtataagagatgacaca-ggtacgtttgtcttagcta |
19110649 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
19110648 |
aaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgg |
19110597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 32096861 - 32096960
Alignment:
| Q |
273 |
ggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgccaaaactgattggtttagtcccacatgtgaagttcatattggagaagct |
372 |
Q |
| |
|
||||||| |||| |||||||| ||||| ||||||||||||| ||| | |||||||| || || || || |||| |||||||||||| ||||||||||| |
|
|
| T |
32096861 |
ggttggaatagggatgtgtataagagacgaacatggtacttttgttttggccaaaacagaatgcttcagccccatgtgtgaagttcatgttggagaagct |
32096960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 21277014 - 21276774
Alignment:
| Q |
17 |
atcatgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaag |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| || | |||||||||||| |||||| |
|
|
| T |
21277014 |
atcatgtggagtctttggaaatgtagaaacatgaaactttggcagcaacaacttgagtccgactcgcaggtgtttcatcacgcaacccatgtacttgaag |
21276915 |
T |
|
| Q |
116 |
aatggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaaca |
215 |
Q |
| |
|
||||| ||||| || |||||||||| |||||||||| ||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
21276914 |
aatggcgaacaacctaaagaattaggtcaagcagcatcac-caatctacaactccacaagttcagcctttcagacaagaggaagatgtttggaagaaacc |
21276816 |
T |
|
| Q |
216 |
agcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21276815 |
ggcacctggcaggtacaaatgcaatattgatgcatccttttc |
21276774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 18178609 - 18178847
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| |||||||| |||||| ||| |||| ||||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
18178609 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaaattgagaccgactcgcaagtgtttcaatgtgcaactcatgtacttgaagaat |
18178708 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| ||| | ||||||||||| |||| |||||||||||||||| || ||||| ||| |||||||| | |||||| ||||||||||||||||||||| || |
|
|
| T |
18178709 |
ggcgaatagcccaaagaatttgatccagcagcagcactcaatttataactctacaggttcagcctttgagacaagaggaagatgtttggaagaaaccggc |
18178808 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
18178809 |
acctggaaggtacaaatgcaatattgatgcatccttttc |
18178847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 226 - 360
Target Start/End: Original strand, 95861 - 95995
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
95861 |
agattcaaatgcaatattgatgcatccttttcgaaacacctgaataaaattggaatgagtatgtgtattagagatgaacatggtgcttttgtccttgcca |
95960 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcat |
360 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| |
|
|
| T |
95961 |
aaattgattggtttagtcccacatgtgaggttcat |
95995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 26952064 - 26951827
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || || |||||||||||| ||||||||||| ||||||||||||||| || |||||||| | ||||||||||| |||||| |||| |||| |
|
|
| T |
26952064 |
atgtggagcctttgaaaatgtagaaacatgaaactttggcagcaacaacttgagacagattcgcaggtgcttcaacgtgcaactcatgtacttgacgaat |
26951965 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| | ||| | | ||||||||| |||| | | | |||||| ||||||||||||||||||||| || |
|
|
| T |
26951964 |
ggc-aacaacccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttcggtctttgagacaagaggaagatgtttggaagaaaccggc |
26951866 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
26951865 |
acctggcaggtataaatgcaacattgatgcatccttttc |
26951827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 395 - 530
Target Start/End: Original strand, 10543821 - 10543955
Alignment:
| Q |
395 |
agtgggtgcatgagctcaacttggaacctattgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaat |
494 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| ||||||||||| |||||||||||||| |||| |||||||||| ||||||||| |||| |
|
|
| T |
10543821 |
agtgggtgcatgagctcaacctaggacctattgattttgagatggatgcgaagagagtggttgatagtttttt-atcttctcgatatgatgttattgaat |
10543919 |
T |
|
| Q |
495 |
ttggtatcattatccaaaattgtaaaactctcttta |
530 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10543920 |
ttggtatcattatccaatattgtaaaactctcttta |
10543955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 403 - 530
Target Start/End: Original strand, 95993 - 96118
Alignment:
| Q |
403 |
catgagctcaacttggaacctattgactttgagatggacgcgaagagagtggtgaatagnnnnnnnatcttctcgacatgatgttaccgaatttggtatc |
502 |
Q |
| |
|
||||||||||| |||| ||||| || ||||||||||| |||||||||||||| |||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
95993 |
catgagctcaatttgggacctac-gattttgagatggatgcgaagagagtggttgatagtttttt-atcttctcggcatgatgttactgaatttggtatc |
96090 |
T |
|
| Q |
503 |
attatccaaaattgtaaaactctcttta |
530 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
96091 |
attatccaaaattgtaaaactctcttta |
96118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 376
Target Start/End: Complemental strand, 26381727 - 26381578
Alignment:
| Q |
227 |
gatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||||||||||||||| || || || || || || ||| | ||||||||||| |||| || ||||| |||||||| ||||| ||| | |||| | || | |
|
|
| T |
26381727 |
gatacaaatgcaatatcgacgcctctttctctaagcacttaaacaaggttggtataggaatatgtataagagatgacacatg-tacatttgtcttagcta |
26381629 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaagctcttg |
376 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
26381628 |
aaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttg |
26381578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 255990 - 255752
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| || |||||||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
255990 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacaacttgagacagattcgcaggtgcttcaacgtgcaactcatgtacttgaagaat |
255891 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| | ||| | | ||||||||| |||| ||| | |||||| ||||||||||||||||||||| || |
|
|
| T |
255890 |
ggcaaacagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttcggcctttgagacaagaggaagatgtttggaagaaaccggc |
255791 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
255790 |
acctggcaggtataaatgcaacattgatgcatccttttc |
255752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 12128995 - 12129233
Alignment:
| Q |
20 |
atgtggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaat |
118 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| ||||||| |||||| || |||| ||| | ||||||||||| |||||| |||||||| |
|
|
| T |
12128995 |
atgtggagcctttggaaatgtagaaacatgaaactttggcagcaacattttgagacagactcgcatgtgcttcaacgtgcaactcatgtacatgaagaat |
12129094 |
T |
|
| Q |
119 |
ggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagc |
218 |
Q |
| |
|
|| |||| |||||||||||||||||||||| || | ||| | | ||||||||| |||| || | |||||| ||||||||||||| ||||||| | |
|
|
| T |
12129095 |
ggcaaacagcccaaagaattagatcaagcagtagtaaccaacccataactccacaggttcgacctttgagacaagaggaagatgtttgaaagaaaccgac |
12129194 |
T |
|
| Q |
219 |
acgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
|| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
12129195 |
acctggcaggtataaatgcaacattgatgcatccttttc |
12129233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 11567860 - 11567808
Alignment:
| Q |
325 |
aaaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
11567860 |
aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgg |
11567808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 5634727 - 5634870
Alignment:
| Q |
227 |
gatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatga-acatggtacttctgtccttgcca |
325 |
Q |
| |
|
|||| ||||||||||| || || || || || || ||| | ||||||||||| |||| || ||||| |||||||| ||||| ||| | |||| | || | |
|
|
| T |
5634727 |
gatataaatgcaatatcgacgcctctttctctaagcacttaaacaaggttggtataggaatatgtataagagatgacacatg-tacgtttgtcttagcta |
5634825 |
T |
|
| Q |
326 |
aaactgattggtttagtcccacatgtgaagttcatattggagaag |
370 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
5634826 |
aaactgaatggtttagtccgatatgtgaagttcatataggagaag |
5634870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 18807264 - 18807316
Alignment:
| Q |
325 |
aaaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
18807264 |
aaaactgaatggtttagtccgttatgtgaagttcatataggagaagctcttgg |
18807316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 23834624 - 23834676
Alignment:
| Q |
325 |
aaaactgattggtttagtcccacatgtgaagttcatattggagaagctcttgg |
377 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||| || |||||||||| |
|
|
| T |
23834624 |
aaaactgaatggtttagtccgatatgtgaagttcatatacgaaaagctcttgg |
23834676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 47294878 - 47294938
Alignment:
| Q |
315 |
tgtccttgccaaaactgattggtttagtcccacatgtgaagttcatattggagaagctctt |
375 |
Q |
| |
|
||||||||| |||||| | ||||||||||| | |||||||| ||||||| |||||||||| |
|
|
| T |
47294878 |
tgtccttgcaaaaacttagtggtttagtccaatttgtgaagtacatattgaagaagctctt |
47294938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 257
Target Start/End: Original strand, 24869977 - 24870154
Alignment:
| Q |
80 |
cgcaggtgttccaacgtgcaacccatgtatttgaagaatggtgaacatcccaaagaattagatcaagcagcagcactcaatctacaactccacaagttca |
179 |
Q |
| |
|
|||||||||| ||||||||||| || || ||||||||| | |||||| ||||||||||||||| | || || ||||||||| | |||||| || |||| |
|
|
| T |
24869977 |
cgcaggtgtttcaacgtgcaactcacctacttgaagaatagagaacatgccaaagaattagatctaccaacatcactcaatccataactccgcaggttcg |
24870076 |
T |
|
| Q |
180 |
gccatccagacaataggaagatgtttggaagaaacaagcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| |||| |||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
24870077 |
gcctataagacaataggaagatagttggaagaaaccggcacttggcaggtataaatgcaacattgatgcatcattttc |
24870154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 30304358 - 30304488
Alignment:
| Q |
23 |
tggagtctatggaaatgtagaaacttgaaactttggaagcaacaacttgagatcgaa-cgcaggtgttccaacgtgcaacccatgtatttgaagaatggt |
121 |
Q |
| |
|
||||| || ||||||||||||||| |||| |||||| ||||||||||||||| || |||||||| | |||||||||| |||||| |||| |||||| |
|
|
| T |
30304358 |
tggagcctttggaaatgtagaaacatgaagctttggcagcaacaacttgagacagattcgcaggtgcttcaacgtgcaattcatgtacttgacgaatggc |
30304457 |
T |
|
| Q |
122 |
gaacatcccaaagaattagatcaagcagcag |
152 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
30304458 |
aaacaacccaaagaattagatcaagcagcag |
30304488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 24274874 - 24274966
Alignment:
| Q |
165 |
aactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
||||||||| |||| ||| | |||||| ||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
24274874 |
aactccacaggttcggcctttgagacaagaggaagatgtttggaagaaaccggcatctggcagatataaatgcagcattgatgcatccttttc |
24274966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 24387339 - 24387247
Alignment:
| Q |
165 |
aactccacaagttcagccatccagacaataggaagatgtttggaagaaacaagcacgtggcagatacaaatgcaatattgatgcatccttttc |
257 |
Q |
| |
|
||||||||| |||| ||| | |||||| ||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
24387339 |
aactccacaggttcggcctttgagacaagaggaagatgtttggaagaaaccggcatctggcagatataaatgcagcattgatgcatccttttc |
24387247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 38363 - 38478
Alignment:
| Q |
226 |
agatacaaatgcaatattgatgcatccttttcgaaacacctgaacaaggttggattaggtatgtgtattagagatgaacatggtacttctgtccttgcca |
325 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | |||||||| ||||||||| | ||| ||||| | |||||||||| |||||||||| ||| ||||| |
|
|
| T |
38363 |
agatacaaatgcaatgttgttgcatcctttgcaaaacacctaaacaaggttttaatagatatgt-tgttagagatgagcatggtactttcgtctatgcca |
38461 |
T |
|
| Q |
326 |
aaactgattggtttagt |
342 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
38462 |
aatttgagtggtttagt |
38478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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