View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0667_low_4 (Length: 523)
Name: NF0667_low_4
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 24759976 - 24760461
Alignment:
| Q |
1 |
tggccaaccaattggtttccgatttccctatttttactgattcaattatttaatcagctttctctttcttcgattttgtttgacaatcaaatggcgaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24759976 |
tggccaaccaattggtttccgatttccctatttttactgattcaattatttaatcagctttctctttcttcgattttgtttgacaatcaaatggcgaggt |
24760075 |
T |
|
| Q |
101 |
gatggctgtttgatactcgcatgcaagcatcgagtgaagcttagggtcggatacnnnnnnnn-----gaaatccagtaaactatcactcctcattcgctt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24760076 |
gatggctgtttgatactcgcatgcaagcatcgagtgaagcttagggtcggatacaaaaaaaaaaaaagaaatccagtaaactatcactcctcattcgctt |
24760175 |
T |
|
| Q |
196 |
ccggatactttgatagtttactggatttctgtgagctcaaaatctaatgggtcgaagacggcggcaaaatggtgattgttcgatgcagaagcccaatcgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24760176 |
ccggatactttgatagtttactggatttctttgagctcaaaatctaatgggtcaaagacggcggcaaaatggtgattgttcgatgcagaagcccaatcgt |
24760275 |
T |
|
| Q |
296 |
ctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattatgtgatttaagaacatt |
395 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24760276 |
ctatgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattacgtgatttaagaacatt |
24760375 |
T |
|
| Q |
396 |
atttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24760376 |
atttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt |
24760461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 35346415 - 35346463
Alignment:
| Q |
302 |
gggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag |
350 |
Q |
| |
|
||||| ||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
35346415 |
gggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag |
35346463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 52127411 - 52127896
Alignment:
| Q |
1 |
tggccaaccaattggtttccgatttccctatttttactgattcaattatttaatcagctttctctttcttcgattttgtttgacaatcaaatggcgaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52127411 |
tggccaaccaattggtttccgatttccctatttttactgattcaattatttaatcagctttctctttcttcgattttgtttgacaatcaaatggcgaggt |
52127510 |
T |
|
| Q |
101 |
gatggctgtttgatactcgcatgcaagcatcgagtgaagcttagggtcggatacnnnnnnnn-----gaaatccagtaaactatcactcctcattcgctt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
52127511 |
gatggctgtttgatactcgcatgcaagcatcgagtgaagcttagggtcggatacaaaaaaaaaaaaagaaatccagtaaactatcactcctcattcgctt |
52127610 |
T |
|
| Q |
196 |
ccggatactttgatagtttactggatttctgtgagctcaaaatctaatgggtcgaagacggcggcaaaatggtgattgttcgatgcagaagcccaatcgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52127611 |
ccggatactttgatagtttactggatttctttgagctcaaaatctaatgggtcaaagacggcggcaaaatggtgattgttcgatgcagaagcccaatcgt |
52127710 |
T |
|
| Q |
296 |
ctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattatgtgatttaagaacatt |
395 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
52127711 |
ctatgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattacgtgatttaagaacatt |
52127810 |
T |
|
| Q |
396 |
atttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52127811 |
atttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt |
52127896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 206 - 481
Target Start/End: Original strand, 40163620 - 40163899
Alignment:
| Q |
206 |
tgatagtttactggatttctgtgagctcaaaatctaatgggtcgaagacggcggcaaaatggtgattgttcgatgcagaagcccaatcgtctacgtgggt |
305 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||| |||| ||||||||| ||||| || ||||||||||| ||| | |||| ||| ||||| |||||| |
|
|
| T |
40163620 |
tgatagtttactggatttctttgaacgcaaaatctgatggatcgaagacg-cggcagaacggtgattgttccatgtaaaagcacaaccgtctttgtgggt |
40163718 |
T |
|
| Q |
306 |
tacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaacc-ccctttttaattatgtgatttaagaacattatttgaatt |
404 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
40163719 |
tacgaatatagtgttcattgagttctcaaaggatttacatgtaagaaattgtgtttgacctccccttttaattatgtgatttaagaacattgtttgaatt |
40163818 |
T |
|
| Q |
405 |
tgaatatgacgtctctg----attagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt |
481 |
Q |
| |
|
|||||||||||||| || ||| | | ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
40163819 |
tgaatatgacgtctatgatatattgggggatgaaaatgctactatatatatttgatcctaaatccacatctttgatgatgt |
40163899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 40163424 - 40163573
Alignment:
| Q |
11 |
attggtttccgatttccctatttttactgattcaattatttaatcagctttctctttcttcgattttgtttg------acaatcaaatggcgaggtgatg |
104 |
Q |
| |
|
||||||||| |||||| || |||| |||||||||| ||||||||| ||||||||||||| |||| ||| | |||||||| |||||||||| |
|
|
| T |
40163424 |
attggtttctgatttctctcatttttctgattcaatcatttaatcatctttctctttctttctttttttttattttttagaatcaaattgcgaggtgata |
40163523 |
T |
|
| Q |
105 |
gctgtttgatactcgcatgcaagcatcgagtgaagcttagggtcggatac |
154 |
Q |
| |
|
|||| ||||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
40163524 |
actgtctgatactcgcatgaaagcattgattgaagcttagggtcggatac |
40163573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 39344961 - 39345011
Alignment:
| Q |
300 |
gtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag |
350 |
Q |
| |
|
||||||| ||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39344961 |
gtgggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag |
39345011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 40163638 - 40163605
Alignment:
| Q |
163 |
gaaatccagtaaactatcactcctcattcgcttc |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
40163638 |
gaaatccagtaaactatcactcctcgttcgcttc |
40163605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 447
Target Start/End: Original strand, 17467958 - 17468140
Alignment:
| Q |
267 |
gtgattgttcgatgcagaagcccaatcgtctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccc |
366 |
Q |
| |
|
|||||||||||||| |||| |||||||| || ||||| | ||||| | ||||||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17467958 |
gtgattgttcgatgtagaataccaatcgtttatgtgggctgcgaatgctgcgttcattgttttctcaaaggatttacatgtaaggagttgtttttaaccc |
17468057 |
T |
|
| Q |
367 |
ccttt-ttaattatgtgatttaag-aacattatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatat |
447 |
Q |
| |
|
| ||| |||||||||||||||| | ||| || |||||||||| |||| ||| || ||||| || | ||||||||||||||| |
|
|
| T |
17468058 |
cttttcttaattatgtgatttaggaaactttgtttgaatttgtttatggcgtatccaattagggatttaagatgctactatat |
17468140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 2273474 - 2273524
Alignment:
| Q |
300 |
gtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag |
350 |
Q |
| |
|
||||||| ||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
2273474 |
gtgggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag |
2273524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 4010808 - 4010856
Alignment:
| Q |
302 |
gggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag |
350 |
Q |
| |
|
||||| ||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
4010808 |
gggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag |
4010856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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