View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0667_low_5 (Length: 501)
Name: NF0667_low_5
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_5 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 4741 - 4925
Alignment:
| Q |
10 |
ctagctgttgcatacgaaggtatgtaaccattgaaccccaattgctcagctgttaaatttccattaaaggttagacaagagtaaatgaagacaattactt |
109 |
Q |
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| T |
4741 |
ctagctgatgcatacgaaggtatgtaaccattgaaccccaattgctcagctgttaaatttccattaaaggttagacaagagtaaatgaagacaattactt |
4840 |
T |
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| Q |
110 |
gcatgcatacaaagctatatattaattaaagagtcaaatcatgaatatatagttgagaaagataaataaactagagtaatactga |
194 |
Q |
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| T |
4841 |
gcatgcattcaaagctatatattaattaaagagtcaaatcatgaatatatagttgagaaagataaataaactagagtaatactga |
4925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 313 - 472
Target Start/End: Original strand, 5045 - 5204
Alignment:
| Q |
313 |
gcaatctcacttaccaatgacatcaacagtagttttgccgttggaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagct |
412 |
Q |
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| T |
5045 |
gcaatctcacttaccaatgacatcaacagtggttttgccgtttgaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagct |
5144 |
T |
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| Q |
413 |
tttgcaatagaagtgagttggttgttgttaccattatccaccaaagagtctccaaaaata |
472 |
Q |
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| T |
5145 |
tttgcaatagaagtgagttggttgttgttaccattatccaccaaagagtctccaaaaata |
5204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 325 - 471
Target Start/End: Complemental strand, 7612595 - 7612449
Alignment:
| Q |
325 |
accaatgacatcaacagtagttttgccgttggaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagcttttgcaatagaa |
424 |
Q |
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| T |
7612595 |
accaatgacatcaacagtagtttttccattggagaaccttccagttggaccaccattaaagtcaatcccataaggaagataattagctttggccaaagaa |
7612496 |
T |
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| Q |
425 |
gtgagttggttgttgttaccattatccaccaaagagtctccaaaaat |
471 |
Q |
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| T |
7612495 |
ttaagattgttattgtttccatcatctaccaaagagtcaccaaaaat |
7612449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 36363758 - 36363845
Alignment:
| Q |
322 |
cttaccaatgacatcaacagtagttttgccgttggaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagct |
412 |
Q |
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| T |
36363758 |
cttaccaattgcatcaacagtggtttttccgttggaaaaccttccagtaggtccacc---aaagtcaattccataaggaaggtaatcagct |
36363845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 5573455 - 5573523
Alignment:
| Q |
350 |
ccgttggaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagcttttgca |
418 |
Q |
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| T |
5573455 |
ccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgca |
5573523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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