View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0667_low_9 (Length: 436)
Name: NF0667_low_9
Description: NF0667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0667_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 35161655 - 35162019
Alignment:
| Q |
64 |
gtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161655 |
gtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttg |
35161754 |
T |
|
| Q |
164 |
tttgttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatcac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35161755 |
tttgttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccccaattcacacttatcac |
35161854 |
T |
|
| Q |
264 |
taatatcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctctg |
363 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161855 |
taatttcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctctg |
35161954 |
T |
|
| Q |
364 |
aaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgtta |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35161955 |
aaatcccgcagaagaacccgcagaagaagccgagttcttcaaccaagtggtgagtctgttcgtta |
35162019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 64 - 428
Target Start/End: Complemental strand, 44798454 - 44798095
Alignment:
| Q |
64 |
gtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798454 |
gtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttg |
44798355 |
T |
|
| Q |
164 |
tttgttaatggaagatgataatgtgttccactttagagaatt-ggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44798354 |
tttgttaatggaagatgataatgtgttccgct---gtgaattgggggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatca |
44798258 |
T |
|
| Q |
263 |
ctaatatcttctataaatatcataattcataat------ttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgc |
356 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
44798257 |
ctaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgtcctctgc |
44798158 |
T |
|
| Q |
357 |
tgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgtta |
428 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
44798157 |
tgctctgaaaccccgcaga---------agaagaagctcagttcttcaatcaagtggtgagtctgttggtta |
44798095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 64 - 261
Target Start/End: Original strand, 39839952 - 39840149
Alignment:
| Q |
64 |
gtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttg |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39839952 |
gtcttcgtgctcgaaggtcacc---acctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattg |
39840048 |
T |
|
| Q |
164 |
tttgttaatggaagatg---ataatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttat |
260 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
39840049 |
tttgttaatggaagatgataataatgtgttccactgtagagaattgtggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttat |
39840148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 248 - 428
Target Start/End: Complemental strand, 44631292 - 44631115
Alignment:
| Q |
248 |
aattcacacttatcactaatatcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
341 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44631292 |
aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
44631193 |
T |
|
| Q |
342 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgtta |
428 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
44631192 |
tccttcgtcctctgctgctctgaaaccccgcaga---------agaagaagctcagttcttcaatcaagtggtgagtctgttggtta |
44631115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 39844963 - 39845026
Alignment:
| Q |
168 |
ttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattga |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
39844963 |
ttaatggaagatgataatgtgttccactgtagagaattggggcttagggattttgagaaattga |
39845026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 39844872 - 39844923
Alignment:
| Q |
71 |
tgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttct |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39844872 |
tgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattattct |
39844923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 35161606 - 35161638
Alignment:
| Q |
30 |
cctaccaccccctcggaaatagtcagcagattt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35161606 |
cctaccaccccctcggaaatagtcagcagattt |
35161638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 39840189 - 39840227
Alignment:
| Q |
296 |
ttctttattattctctctcagacgtatgtcaaaaaatgc |
334 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39840189 |
ttctttcttattctctctcagacgtacgtcaaaaaatgc |
39840227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 44798503 - 44798471
Alignment:
| Q |
30 |
cctaccaccccctcggaaatagtcagcagattt |
62 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
44798503 |
cctaccacccccttggaaatagtcagcagattt |
44798471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2870 times since January 2019
Visitors: 4017