View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_high_10 (Length: 346)
Name: NF0668_high_10
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 41511994 - 41511683
Alignment:
| Q |
30 |
cttataatatagaagtattaattattatattgattcaatacctcttcatgcatgttgcatataacttcatgctttgcaatatagaatatgcaatgataga |
129 |
Q |
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| T |
41511994 |
cttataatatagaagtactaattattatattgattcaatacctcttcatgcatgttgcata--acttcatgctttgcaatgtagaatatgcaatgataga |
41511897 |
T |
|
| Q |
130 |
aagaagaagaaacacatgacaaattatgttataaaattacatatctcttcaagtttcaactttgatgcttgattgttgttgcatgatatcttgaataagc |
229 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41511896 |
aagaagaagaaaaacatgacaaattatgttataaaattacatatctcttcaagtttcaactttgatgtttgattgttgttgcatgatatcttgaataagc |
41511797 |
T |
|
| Q |
230 |
aaagtgatattaagataagaagatccacctttttcaacagcnnnnnnngcaatctcactaagttcattggccctttctctactctctttactctcttcaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
41511796 |
aaagtgatattaagataagaagatccacctttttcaacagctttttttgcaatctcactaagttcattagccctttctcttctctctttactctcttcaa |
41511697 |
T |
|
| Q |
330 |
cttcctcattcatc |
343 |
Q |
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|||||||||||||| |
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| T |
41511696 |
cttcctcattcatc |
41511683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 61 - 343
Target Start/End: Complemental strand, 41521005 - 41520723
Alignment:
| Q |
61 |
gattcaatacctcttcatgcatgttgcatataacttcatgctttgcaatatagaatatgcaatgatagaaagaagaagaaacacatgacaaattatgtta |
160 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||| | | | |||||| | | ||||||||||||| |
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| T |
41521005 |
gattcaatacctcttcatgcatgttgcata--acttcctgctttgcagtgtagaatatgcaatgatatagaaagaaagaaaaaaaatacaaattatgtta |
41520908 |
T |
|
| Q |
161 |
taaaattacatatctct--tcaagtttcaactttgatgcttgattgttgttgcatgatatcttgaataagcaaagtgatattaagataagaagatccacc |
258 |
Q |
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| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41520907 |
tgaaattacatatctctcttcaagtttcaactttgatgcttaattgttgttgcatgatatcttgaataagcaaagtgatattaagataagaagatccacc |
41520808 |
T |
|
| Q |
259 |
tttttcaacagcnnnnnnngcaatctcactaagttcattggccctttctctactctctttactctcttcaacttcctcattcatc |
343 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||| |
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| T |
41520807 |
tttttcaacagctttttttgcaatctcactaagttcattagccctttctcttctctctttactctcttgatcttcctcattcatc |
41520723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 327
Target Start/End: Complemental strand, 48533194 - 48533038
Alignment:
| Q |
171 |
tatctcttcaagtttcaactttgatgcttgattgttgttgcatgatatcttgaataagcaaagtgatattaagataagaagatccacctttttcaacagc |
270 |
Q |
| |
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|||| ||||| || |||||| || |||||||| ||||| |||||||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||| |
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| T |
48533194 |
tatcccttcatgtgtcaactctgctgcttgatcattgttccatgatatcttggataagcaaatttatattaagatgagaggatccacctttttcaacagc |
48533095 |
T |
|
| Q |
271 |
nnnnnnngcaatctcactaagttcattggccctttctctactctctttactctcttc |
327 |
Q |
| |
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|| |||||||| |||| | | ||||||||||| ||||||||||| ||||| |
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|
| T |
48533094 |
tctttttgccatctcacttagtttactagccctttctcttctctctttactttcttc |
48533038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 41527951 - 41527921
Alignment:
| Q |
30 |
cttataatatagaagtattaattattatatt |
60 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41527951 |
cttataatatagaagtattaattattatatt |
41527921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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