View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_high_17 (Length: 257)

Name: NF0668_high_17
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_high_17
NF0668_high_17
[»] chr2 (5 HSPs)
chr2 (34-229)||(16549826-16550021)
chr2 (135-229)||(1979988-1980082)
chr2 (133-229)||(4789218-4789314)
chr2 (133-227)||(16107347-16107441)
chr2 (133-229)||(10733859-10733956)
[»] chr1 (3 HSPs)
chr1 (133-227)||(2981105-2981199)
chr1 (133-229)||(18547880-18547976)
chr1 (132-207)||(12252543-12252618)
[»] chr5 (1 HSPs)
chr5 (133-229)||(14460134-14460230)
[»] chr8 (2 HSPs)
chr8 (133-229)||(26588111-26588207)
chr8 (132-211)||(1165472-1165550)
[»] chr3 (3 HSPs)
chr3 (148-229)||(8354147-8354228)
chr3 (132-233)||(5701026-5701127)
chr3 (148-225)||(22349251-22349328)
[»] chr6 (3 HSPs)
chr6 (132-229)||(7732648-7732745)
chr6 (179-227)||(24585721-24585769)
chr6 (150-229)||(32934080-32934158)
[»] chr7 (1 HSPs)
chr7 (145-207)||(6015811-6015873)
[»] chr4 (1 HSPs)
chr4 (148-188)||(38159313-38159353)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 16549826 - 16550021
Alignment:
Q  34 cactttaattcctgttataaacaaatgttgaatgaagtttgttacaatttgttatttattttctcagttatagatatgttgtagttctgcactcagcgcc 133  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  16549826 cactttaattcctgttagaaacaaatgttgaatgaagtttgttacagtttgttatttattttctcagttatagatatgttgtagttctgcactcagtgtc 16549925  T
Q  134 agggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    |||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  16549926 agggacggattcaaaaatttcagaaagtcgggtcaaactcgcttatcataaatatttatacaaaaatatataaaaccacatccattaaaatgatga 16550021  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 1980082 - 1979988
Alignment:
Q  135 gggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||| ||| |||||||||||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  1980082 gggacggatccagaaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 4789218 - 4789314
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||||| ||| || |||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  4789218 cagggacggatccaaaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 16107347 - 16107441
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 227  Q
    ||||||| ||| ||| |||||||||||||  ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  16107347 cagggacggatccaggaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 10733956 - 10733859
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataa-atatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||||| ||| ||||||||| |||||||| ||||||  ||| ||||||| | |||| || |||||||||||||||||||   |||||||||||||||    
T  10733956 cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcattatatatttaaacaaaaatatataaaaccataaccattaaaatgatga 10733859  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 2981199 - 2981105
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 227  Q
    ||||||| ||| |||||||||||||||||| ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  2981199 cagggacggatccagaaatttcagaaagtggggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 18547880 - 18547976
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||||| ||| ||||||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  18547880 cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 12252618 - 12252543
Alignment:
Q  132 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 207  Q
    ||||| || ||| |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  12252618 ccaggaacggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 12252543  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 14460134 - 14460230
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||||| ||| ||| |||||||||||||| |||||  |||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  14460134 cagggacggatccaggaatttcagaaagtggggtcacgctcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 26588111 - 26588207
Alignment:
Q  133 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    ||||||| ||| |||||||||||||||| | ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  26588111 cagggacggatccagaaatttcagaaagcggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 1165550 - 1165472
Alignment:
Q  132 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaacca 211  Q
    |||||||||||| |||||||||||||||||| |||||| |||   ||| ||||| || ||||||||| ||||||||||||    
T  1165550 ccagggacagatccagaaatttcagaaagtggggtcaagctcaggtattataaa-atttatacaaaattatataaaacca 1165472  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 8354147 - 8354228
Alignment:
Q  148 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    |||||||| |||| ||||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  8354147 aaatttcaaaaagcgaggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 5701127 - 5701026
Alignment:
Q  132 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatgatg 231  Q
    |||||||  ||| |||||||||||||||||  ||||||  ||| || |||||||||| |||||||| |||| ||||||||   ||||||||||||| |||    
T  5701127 ccagggatggatccagaaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaagatatctaaaaccataaccattaaaatgataatg 5701028  T
Q  232 tc 233  Q
    ||    
T  5701027 tc 5701026  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 22349251 - 22349328
Alignment:
Q  148 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatg 225  Q
    |||||| |||||| |||||||| |||| || | |||||||| ||||||||||||||||||| || | |||||| ||||    
T  22349251 aaatttgagaaagagaggtcaagctcgttttttataaatatttatacaaaaatatataaaatcatgaccattataatg 22349328  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 7732648 - 7732745
Alignment:
Q  132 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    |||||||| ||| ||  |||| ||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  7732648 ccagggacggatccaagaattacagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  179 tcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 227  Q
    |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 32934080 - 32934158
Alignment:
Q  150 atttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 229  Q
    |||||||||| || ||||||  ||| ||||||||||||| || |||||||||||| ||||||   |||||||||||||||    
T  32934080 atttcagaaaatggggtcaagatcgtttatcataaatatttaaacaaaaatatat-aaaccatagccattaaaatgatga 32934158  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 6015873 - 6015811
Alignment:
Q  145 cagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 207  Q
    |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  6015873 cagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 6015811  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 38159313 - 38159353
Alignment:
Q  148 aaatttcagaaagtgaggtcaaactcgcttatcataaatat 188  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  38159313 aaatttcagaaagtgaggtcaagctcgtttatcataaatat 38159353  T

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