View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_high_18 (Length: 251)

Name: NF0668_high_18
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_high_18
NF0668_high_18
[»] chr6 (2 HSPs)
chr6 (1-248)||(13609351-13609598)
chr6 (97-165)||(31561110-31561178)
[»] chr4 (8 HSPs)
chr4 (6-248)||(31245300-31245542)
chr4 (97-222)||(31158951-31159076)
chr4 (97-222)||(31489919-31490044)
chr4 (90-225)||(31019495-31019630)
chr4 (90-225)||(31029376-31029511)
chr4 (192-222)||(31477218-31477248)
chr4 (192-222)||(31502340-31502370)
chr4 (198-234)||(31033784-31033820)
[»] chr7 (1 HSPs)
chr7 (6-248)||(14724579-14724818)
[»] chr5 (1 HSPs)
chr5 (6-226)||(17598944-17599168)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 13609598 - 13609351
Alignment:
Q  1 ctgcataaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609598 ctgcataaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatc 13609499  T
Q  101 tactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609498 tactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgt 13609399  T
Q  201 tcaactttatcaacattatcaagaactacaagggatattattcgacat 248  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  13609398 tcaactttatcaacattatcaagaactacaagggattttatttgacat 13609351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 31561178 - 31561110
Alignment:
Q  97 catctactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaaccta 165  Q
    |||| ||||||| |||| |||| |||||  ||||||||||||| |  |||||||||||||||| |||||    
T  31561178 catccactccatactctttcaatatatgctcatctctagaaatgataataattctactccctgcaccta 31561110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 31245542 - 31245300
Alignment:
Q  6 taaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctactc 105  Q
    ||||| |||| |||||||||||| |||||||| ||||||||||||||| ||||||||| |||| |||| ||   ||| ||||  || | |||||||||||    
T  31245542 taaccgctcatgatatcatcactcttgaaagccttcctacaaaacaattgaagggcattattatgatccaagagtcgaactttgtacacttcatctactc 31245443  T
Q  106 catgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgttcaac 205  Q
    |||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||| ||||||||||| ||  ||| ||||||||||||||||||    
T  31245442 catgctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagccattctcgtgtcatagccaatttatccagttgttcaac 31245343  T
Q  206 tttatcaacattatcaagaactacaagggatattattcgacat 248  Q
    || |||||||||||||||||||| ||||||| ||||| |||||    
T  31245342 ttgatcaacattatcaagaactataagggattttatttgacat 31245300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 31158951 - 31159076
Alignment:
Q  97 catctactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccag 196  Q
    |||| ||||||| |||| ||||||||||  |||||||||||||||  |  ||||||||||||| |||||  ||||| ||  | |   | | |||||| ||    
T  31158951 catcaactccatactctttcaagatatgttcatctctagaaattataacgattctactccctgcacctaagcattcacgattcacagctaatttatcaag 31159050  T
Q  197 ttgttcaactttatcaacattatcaa 222  Q
    ||||||||||||||||||||||||||    
T  31159051 ttgttcaactttatcaacattatcaa 31159076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 31490044 - 31489919
Alignment:
Q  97 catctactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccag 196  Q
    |||| ||||||| |||| ||||||||||  |||||| ||||||||  || ||||||||||||| |||||  ||||| ||  | |   ||| |||||| ||    
T  31490044 catcaactccatactctttcaagatatgttcatctccagaaattataatgattctactccctgcacctaaccattcacgattcacacccaatttatcaag 31489945  T
Q  197 ttgttcaactttatcaacattatcaa 222  Q
    |||| |||||||||||||||||||||    
T  31489944 ttgtccaactttatcaacattatcaa 31489919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 31019495 - 31019630
Alignment:
Q  90 taaatttcatctactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtt 189  Q
    |||| |||||| ||||||| |||  ||||||||||  |||||||||||||||  || ||||||||||||  ||||| |||||| ||  |||   | |  |    
T  31019495 taaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctactccctacacctaaacattcacgatttaaagctaact 31019594  T
Q  190 tatccagttgttcaactttatcaacattatcaagaa 225  Q
    |||| || ||||||||||||||||||||||| ||||    
T  31019595 tatcgagctgttcaactttatcaacattatcgagaa 31019630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 31029376 - 31029511
Alignment:
Q  90 taaatttcatctactccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtt 189  Q
    |||| |||||| ||||||| |||  ||||||||||  |||||||||||||||  || ||||||||||||| ||||| | |||| ||  |||   | |  |    
T  31029376 taaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctactccctgcacctaaatattcacgatttaaagctaact 31029475  T
Q  190 tatccagttgttcaactttatcaacattatcaagaa 225  Q
    |||| || ||||||||||||||||||||||| ||||    
T  31029476 tatcgagctgttcaactttatcaacattatcgagaa 31029511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 31477248 - 31477218
Alignment:
Q  192 tccagttgttcaactttatcaacattatcaa 222  Q
    |||||||||||||||||||||||||||||||    
T  31477248 tccagttgttcaactttatcaacattatcaa 31477218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 31502370 - 31502340
Alignment:
Q  192 tccagttgttcaactttatcaacattatcaa 222  Q
    |||||||||||||||||||||||||||||||    
T  31502370 tccagttgttcaactttatcaacattatcaa 31502340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 31033784 - 31033820
Alignment:
Q  198 tgttcaactttatcaacattatcaagaactacaaggg 234  Q
    |||||||||| |||||||||||||||||||| |||||    
T  31033784 tgttcaacttgatcaacattatcaagaactagaaggg 31033820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 14724818 - 14724579
Alignment:
Q  6 taaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctactc 105  Q
    ||||| |||| || ||| ||| |||| ||||||||||||||||||||| |||||||||||||| ||| ||    ||| ||||  |||| |||||||||||    
T  14724818 taaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactc 14724719  T
Q  106 catgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgttcaac 205  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||||||| ||||  ||||| |||| || | | ||| ||| ||| || |||||||||||    
T  14724718 catgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggccaatttttcaagttgttcaac 14724619  T
Q  206 tttatcaacattatcaagaactacaagggatattattcgacat 248  Q
    |   | |||||||||||||||| |||| ||| ||||| |||||    
T  14724618 t---tgaacattatcaagaacttcaagagattttatttgacat 14724579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 17598944 - 17599168
Alignment:
Q  6 taaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctactc 105  Q
    ||||| |||| || ||| ||| |||| ||||||||||||||||||||| |||||||||||||| ||| ||    ||| ||||  |||| |||||||||||    
T  17598944 taaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactc 17599043  T
Q  106 catgctctctcaagatatggccatctctagaaattacgataattctactccctgaacct----agacattctcgtgttatgtccagtttatccagttgtt 201  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||||||| | ||  |||    || ||||||| | | ||| ||| ||| ||||||||||    
T  17599044 catgctctctgaagatatggctatctctagatattacgatgattctacttcttgtgcctagccagccattctcatttcatggccaatttttccagttgtt 17599143  T
Q  202 caactttatcaacattatcaagaac 226  Q
    |||||| || |||||||||||||||    
T  17599144 caacttgatgaacattatcaagaac 17599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1338 times since January 2019
Visitors: 4117