View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0668_low_1 (Length: 420)
Name: NF0668_low_1
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 161 - 333
Target Start/End: Original strand, 2204523 - 2204695
Alignment:
| Q |
161 |
atttatggtgtgtgtggatgagctaatggaaattttagagaaatatgaaaaattctaagcagttaaatgtttcaaccgaatttccttcatttataattgt |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2204523 |
atttatggtgtgtgtggatgtgctaatggaaattttagagaaatatgaaaaattctaagcagttaaatgtttcaactgaatttccttcatttataattgt |
2204622 |
T |
|
| Q |
261 |
atgtttggatagaagaattaaatttcttaatttttataaattttgaaagttttggggtaaagtaataaaagaa |
333 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2204623 |
atgtttggatagaagaattcaatttcttaatttttataaattttgaaagttttggggtaaagtaataaaagaa |
2204695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 2204366 - 2204499
Alignment:
| Q |
30 |
aaacatgggatttggatttgatgccgtcaacaatccatgcaattaactatgttgctagttgttatcaatttcaatctaacaactactgaagtaatgattg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2204366 |
aaacatgggatttggatttgatgccgtcaacaatccatgcaattaactatgttgctagttgttatcaatttcaatctaacaactactgacgtaatgattg |
2204465 |
T |
|
| Q |
130 |
tgtggattgttggtcacatcaaatgcattctatt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2204466 |
tgtggattgttggtcacatcaaatgcattctatt |
2204499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 496 times since January 2019
Visitors: 4087