View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_15 (Length: 350)
Name: NF0668_low_15
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 66 - 350
Target Start/End: Original strand, 28886790 - 28887093
Alignment:
| Q |
66 |
ataattgaacaaaatgttagcctttagtgtttttctgtaggatttatagaggttcttcatcagttgaatgatagatttatggatgcaataagggggataa |
165 |
Q |
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| T |
28886790 |
ataattgaacaaaatgttagcttttagtgtttttctgtaggatttatagaggttcttcatcagttgaatgatagatttatggatgcaataagggggataa |
28886889 |
T |
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| Q |
166 |
agttgtgaggttttggagggtgatgctggtggtgaagttgatgttgc-------------------tggaggagagacaagggtgatagaatggtgtaaa |
246 |
Q |
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| T |
28886890 |
agttgtgaggttttggagggtgatgctggtggtgaaattgatgttgctggcgggtgagtggggacatggaggagagacaagggtgatagaatggtgtaaa |
28886989 |
T |
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| Q |
247 |
aatgataaactcccttggacattatttatttatctaacataatccattacttgattttcctgaaaatctctacaaaataacttgttcattttatttttaa |
346 |
Q |
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| T |
28886990 |
aatgataaactcccttggacattatttatttatctaacataatccattacttgattttcctgaaaatctctacaaaataaattgttcattttatttttaa |
28887089 |
T |
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| Q |
347 |
atat |
350 |
Q |
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|||| |
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| T |
28887090 |
atat |
28887093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 32870880 - 32871025
Alignment:
| Q |
70 |
ttgaacaaaatgttagcctttagtgtttttctgtaggatttatagaggttcttcatcagttgaatgatagatttatggatgcaataagggggataaagtt |
169 |
Q |
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| T |
32870880 |
ttgaactaaatgttagcttttagtgttttattgtaagatttataaaggttcttaatcagttgaataatatatttatggatgtaataagggggataaagtt |
32870979 |
T |
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| Q |
170 |
gtgaggttttggagggtgatgctggtggtgaagttgatgttgctgg |
215 |
Q |
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| T |
32870980 |
gtgaggtttgggagggcggtgctggtggtgaagttcatgttgctgg |
32871025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 7987715 - 7987571
Alignment:
| Q |
70 |
ttgaacaaaatgttagcctttagtgtttttctgtaggatttatagaggttcttcatcagttgaatgatagatttatggatgcaataagggggataaagtt |
169 |
Q |
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| T |
7987715 |
ttgaacaaaatgttagcttttagtgttttattgtaagatttataaaggttcttaatcagttgaataatagatttatggatgtaataagggggat-aagtt |
7987617 |
T |
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| Q |
170 |
gtgaggttttggagggtgatgctggtggtgaagttgatgttgctgg |
215 |
Q |
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| T |
7987616 |
gtgaggtttgggagggcggtgctgatggtgaagttcatgttgctgg |
7987571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 5929745 - 5929792
Alignment:
| Q |
128 |
gttgaatgatagatttatggatgcaataagggggataaagttgtgagg |
175 |
Q |
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| T |
5929745 |
gttgaataatagatttatggatgcaataaagggggtaaggttgtgagg |
5929792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 40050223 - 40050306
Alignment:
| Q |
128 |
gttgaatgatagatttatggatgcaataagggggataaagttgtgaggttttggagggtgatgctggtggtgaagttgatgttgc |
212 |
Q |
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||||||| ||||||||||||||||||||| | | ||| ||| |||||| | |||||| | |||| ||||||||||||||||||| |
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| T |
40050223 |
gttgaataatagatttatggatgcaataaaagaggtaaggttctgaggtataggagggcggtgct-gtggtgaagttgatgttgc |
40050306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 32144632 - 32144572
Alignment:
| Q |
254 |
aactcccttggacattatttatttatctaacataatccattacttga-ttttcctgaaaat |
313 |
Q |
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| T |
32144632 |
aactcccattgacaatatttatttatatgacataatccaatacttgatttttcctgaaaat |
32144572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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