View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_low_21 (Length: 346)

Name: NF0668_low_21
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_low_21
NF0668_low_21
[»] chr6 (6 HSPs)
chr6 (1-346)||(31564366-31564721)
chr6 (46-210)||(33416366-33416536)
chr6 (247-346)||(33385571-33385670)
chr6 (247-345)||(33259861-33259959)
chr6 (1-89)||(33385707-33385795)
chr6 (270-346)||(24631864-24631940)
[»] chr5 (2 HSPs)
chr5 (55-209)||(30653203-30653360)
chr5 (277-328)||(11457158-11457209)
[»] scaffold0428 (1 HSPs)
scaffold0428 (247-345)||(3949-4047)
[»] chr2 (3 HSPs)
chr2 (247-312)||(17443537-17443602)
chr2 (13-92)||(17443424-17443503)
chr2 (241-293)||(43199930-43199982)
[»] chr8 (1 HSPs)
chr8 (275-346)||(13000381-13000450)
[»] chr7 (1 HSPs)
chr7 (277-328)||(3468674-3468725)
[»] chr3 (1 HSPs)
chr3 (277-328)||(43115116-43115167)
[»] chr1 (1 HSPs)
chr1 (275-326)||(15581316-15581367)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31564366 - 31564721
Alignment:
Q  1 caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgc----tgttt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  31564366 caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgttt 31564465  T
Q  97 ctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaatttatacatgtatttcaatttttac------atgtaaaagagaaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||    
T  31564466 ctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaa 31564565  T
Q  191 atgaattatacttccattttgcccatcttctcatattgttttgcctcttgtggattgatgtatttgaacttatacagtcatattagcacttgtgagactg 290  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31564566 attaattatacttccattttgcccatcttttcatattgttttgcctcttgtggattgatatatttgaacttatacactcatattagcacttgtgagactg 31564665  T
Q  291 tttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 346  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31564666 tttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttttcagct 31564721  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  46 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 141  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  142 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 210  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 346
Target Start/End: Complemental strand, 33385670 - 33385571
Alignment:
Q  247 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 346  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 33259959 - 33259861
Alignment:
Q  247 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagc 345  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||    
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagc 33259861  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33385795 - 33385707
Alignment:
Q  1 caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttattt 89  Q
    ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  |||||| ||| || |||| ||||||||||||||||    
T  33385795 caaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttattt 33385707  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 24631864 - 24631940
Alignment:
Q  270 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 346  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| ||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagct 24631940  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  55 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 150  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  151 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 209  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  277 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 328  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

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Target: scaffold0428 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 4047 - 3949
Alignment:
Q  247 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagc 345  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||    
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagc 3949  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  247 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 312  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 17443424 - 17443503
Alignment:
Q  13 tatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgct 92  Q
    ||||||| ||||||||||||||| |||||||  |||||||  |||||| ||  || |||| |||||||||||||||||||    
T  17443424 tatctaactctaatggacaaaccagcattacagcttcagatgaaggcttgaccaaaggttgcaatttcatcttatttgct 17443503  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 43199982 - 43199930
Alignment:
Q  241 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgttt 293  Q
    |||||| || |||||||||||||  | |||||| |||||||||||||||||||    
T  43199982 tggattcatttatttgaacttatctactcatataagcacttgtgagactgttt 43199930  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 13000381 - 13000450
Alignment:
Q  275 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 346  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  |||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagct 13000450  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 3468725 - 3468674
Alignment:
Q  277 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 328  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtcca 3468674  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 43115167 - 43115116
Alignment:
Q  277 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 328  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtcca 43115116  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  275 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 326  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

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