View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_23 (Length: 343)
Name: NF0668_low_23
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 263
Target Start/End: Original strand, 40725219 - 40725417
Alignment:
| Q |
72 |
gtcaagtagttagaaaatgggatgttcgaggtttaaatct------ttgtatttgttaataccatctctaccaacaactaaac-aagttcacgtgatatt |
164 |
Q |
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| T |
40725219 |
gtcaagtaactagaaagtgggatgttcgaggtttaaatctcagcacttatatttgttaataccatctctatcaacaactgaactaagttcacgtgatatt |
40725318 |
T |
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| Q |
165 |
atcatagatcatagttgttcagtgcaggttccgtaagaaaaatactatcaaaagttttacgtataatatatatgagattaatttttatgcacaagctgt |
263 |
Q |
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| T |
40725319 |
atcatagatcacatttgttcagtgcaggttccgtgagaaaaatactatcaaaagttttacgtataatatatatgagattaatttttatgcacaagctgt |
40725417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 20017456 - 20017396
Alignment:
| Q |
256 |
caagctgttgcaagttgttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
316 |
Q |
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| T |
20017456 |
caagctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 51805608 - 51805668
Alignment:
| Q |
256 |
caagctgttgcaagttgttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805608 |
caagctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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