View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| ||||||||||||||||
Alignment Overview
Query: NF0668_low_27 (Length: 326)
Name: NF0668_low_27
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| |||||
| ||||||
| ||||||
Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 3377018 - 3376870
Alignment:
| Q | 89 | catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagacaaacttcttaattgatttggtgattgaaaagg | 188 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
| T | 3377018 | catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagagaaacttcttaattgatttggtgattgaaaagg | 3376919 | T |
 | ||||
| Q | 189 | acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc | 237 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 3376918 | acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc | 3376870 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 2372487 - 2372397
Alignment:
| Q | 140 | cattaacatcaaaagacaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat | 230 | Q |
| |||| ||||||||||| || ||| | || ||||| || ||| |||||||||| |||||||||| |||||||||| ||||||||||||||| | ||||
| T | 2372487 | cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat | 2372397 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University