View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_29 (Length: 320)
Name: NF0668_low_29
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 9171491 - 9171388
Alignment:
| Q |
141 |
gcctacttcgcccgtggttggtaggagttggccaaaacgcgcatggccaaaccaaatacattaacccagtcatgaaaaatttctcttttgttgtccattc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
9171491 |
gcctacttcgcccgtggttggtaggagttggccaaaacacgcatggccaaaccaaatacattaacccagtcatgcaaaattgctcttttgttgtccattc |
9171392 |
T |
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| Q |
241 |
tgtg |
244 |
Q |
| |
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|||| |
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| T |
9171391 |
tgtg |
9171388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 9171583 - 9171523
Alignment:
| Q |
49 |
catcaacagcaacaacaacacttcattctgttacctcaccaaacaaaatctctacctcatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9171583 |
catcaacagcaacaacaacacttcattctgttacctcaccaaacaaaatctctacctcatc |
9171523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 9158937 - 9159040
Alignment:
| Q |
141 |
gcctacttcgcccgtggttggtaggagttggccaaaacgcgcatggccaaaccaaatacattaacccagtcatgaaaaatttctcttttgttgtccattc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | | ||||||| || ||| |||||||||||||||||| |
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| T |
9158937 |
gcctacttcgcccgtggttggtaggagttggccaaaacgcgcatggtcaacccaaatacttccatccagtcaaccaagattgctcttttgttgtccattc |
9159036 |
T |
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| Q |
241 |
tgtg |
244 |
Q |
| |
|
|||| |
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|
| T |
9159037 |
tgtg |
9159040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 9158845 - 9158905
Alignment:
| Q |
49 |
catcaacagcaacaacaacacttcattctgttacctcaccaaacaaaatctctacctcatc |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9158845 |
catcaacagcaacaacaacactttattctgttacctcaccaaacaaaatctctacctcatc |
9158905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 7038381 - 7038333
Alignment:
| Q |
61 |
caacaacacttcattctgttacctcaccaaacaaaatctctacctcatc |
109 |
Q |
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|
||||||||||||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
7038381 |
caacaacacttcattctgttaactctccaaacaaaatctcttcctcatc |
7038333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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