View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_30 (Length: 319)
Name: NF0668_low_30
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 39411979 - 39411704
Alignment:
| Q |
21 |
acatcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccattgctgatcttgaaagacaaaacaaagggttgattagaagagtt |
120 |
Q |
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| T |
39411979 |
acatcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccatttctgatcttgaaagacaaaacaaagggttgattagaagagtt |
39411880 |
T |
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| Q |
121 |
caatctgaagggaacttggaagacttagcctatgccactagttgtaacaacaatatggactcttcttctaaaaggtattcagtgagacaaagaggcttcg |
220 |
Q |
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| T |
39411879 |
caatctgaagggaacttggaagacttagcctatgccactaattgtaacaacaatatggactcttcttctaaaaggtattcagtgagacaaagaggcttcg |
39411780 |
T |
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| Q |
221 |
cactagagaccattccatctttctctctttcaaagcaaacaggcttgcgtgaagaagaaactgattttgaagatga |
296 |
Q |
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| T |
39411779 |
cactagagaccattccatctttctctctttcaaagcaaacaggcttgcgtgaagaagaaactgattttgaagatga |
39411704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 39789771 - 39790045
Alignment:
| Q |
22 |
catcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccattgctgatcttgaaagacaaaacaaagggttgattagaagagttc |
121 |
Q |
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| T |
39789771 |
catcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagacaaaacaaagggt---ttagaagagttc |
39789867 |
T |
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| Q |
122 |
aatctgaagggaacttggaagacttagcctatgccactagttgtaacaaca------------------atatggactcttcttctaaaaggtattcagt |
203 |
Q |
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| T |
39789868 |
aatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttcttctaagaggtattcagc |
39789967 |
T |
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| Q |
204 |
gag---acaaagaggcttcgcactagagaccattccatctttctctctttcaaagcaaacaggcttgcgtgaagaaga |
278 |
Q |
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|| ||||||||| || ||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
39789968 |
tagacaacaaagaggttttgcacttgagaccattccatctttctctctttctaagcgaaccggcttgcgtgaagaaga |
39790045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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