View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_low_34 (Length: 310)

Name: NF0668_low_34
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_low_34
NF0668_low_34
[»] scaffold0433 (1 HSPs)
scaffold0433 (89-235)||(8167-8313)
[»] chr3 (23 HSPs)
chr3 (89-235)||(6111159-6111305)
chr3 (89-235)||(13212359-13212505)
chr3 (89-235)||(8491443-8491589)
chr3 (89-235)||(15599886-15600032)
chr3 (89-235)||(10571568-10571714)
chr3 (89-235)||(10578334-10578480)
chr3 (89-235)||(15341221-15341367)
chr3 (89-235)||(15356588-15356734)
chr3 (89-235)||(15606431-15606577)
chr3 (89-235)||(16481460-16481606)
chr3 (89-234)||(13517868-13518013)
chr3 (78-235)||(18538043-18538200)
chr3 (89-237)||(17196748-17196896)
chr3 (75-223)||(32056059-32056207)
chr3 (89-235)||(1646498-1646644)
chr3 (105-232)||(23014348-23014475)
chr3 (146-231)||(13258661-13258746)
chr3 (120-231)||(16201309-16201420)
chr3 (154-235)||(17780165-17780246)
chr3 (154-235)||(19081466-19081547)
chr3 (88-229)||(25801252-25801392)
chr3 (90-156)||(17137439-17137505)
chr3 (141-205)||(54333200-54333264)
[»] chr6 (13 HSPs)
chr6 (89-235)||(17690442-17690588)
chr6 (89-235)||(27278426-27278572)
chr6 (89-235)||(27297718-27297864)
chr6 (89-235)||(27303317-27303463)
chr6 (89-235)||(27380229-27380375)
chr6 (89-235)||(27470612-27470758)
chr6 (89-235)||(29309949-29310095)
chr6 (89-235)||(17683459-17683605)
chr6 (89-235)||(29316908-29317054)
chr6 (89-235)||(11652757-11652903)
chr6 (89-235)||(18336648-18336794)
chr6 (105-210)||(28755282-28755386)
chr6 (178-210)||(16393506-16393538)
[»] chr1 (8 HSPs)
chr1 (89-235)||(18253089-18253235)
chr1 (89-231)||(18531519-18531661)
chr1 (89-235)||(27309555-27309701)
chr1 (89-235)||(9075879-9076025)
chr1 (81-235)||(16358035-16358191)
chr1 (146-235)||(21169411-21169500)
chr1 (89-179)||(27130442-27130532)
chr1 (104-232)||(22640856-22640984)
[»] scaffold0234 (2 HSPs)
scaffold0234 (89-237)||(1319-1467)
scaffold0234 (89-237)||(10212-10360)
[»] scaffold0061 (1 HSPs)
scaffold0061 (89-235)||(5198-5344)
[»] chr8 (9 HSPs)
chr8 (89-235)||(22172544-22172690)
chr8 (89-235)||(6095205-6095351)
chr8 (89-235)||(21941726-21941872)
chr8 (78-235)||(15327271-15327428)
chr8 (78-235)||(15507640-15507797)
chr8 (88-235)||(24644007-24644153)
chr8 (89-185)||(28549107-28549203)
chr8 (109-185)||(24796039-24796114)
chr8 (95-185)||(29230479-29230568)
[»] chr4 (23 HSPs)
chr4 (89-237)||(18263271-18263419)
chr4 (89-237)||(18270132-18270280)
chr4 (89-235)||(8859251-8859397)
chr4 (89-235)||(869680-869826)
chr4 (89-235)||(5715032-5715178)
chr4 (89-235)||(26964630-26964776)
chr4 (89-235)||(26971524-26971670)
chr4 (89-235)||(55613767-55613913)
chr4 (78-235)||(5708385-5708542)
chr4 (89-235)||(19919508-19919654)
chr4 (89-235)||(19925737-19925883)
chr4 (78-235)||(10620310-10620467)
chr4 (78-235)||(10627392-10627549)
chr4 (78-235)||(28392144-28392301)
chr4 (89-223)||(4425629-4425763)
chr4 (90-235)||(47387932-47388077)
chr4 (104-231)||(10676570-10676697)
chr4 (104-231)||(10890210-10890337)
chr4 (90-210)||(35224612-35224732)
chr4 (161-231)||(20579418-20579488)
chr4 (173-235)||(10825329-10825391)
chr4 (104-159)||(10690368-10690423)
chr4 (104-159)||(10904008-10904063)
[»] scaffold0390 (2 HSPs)
scaffold0390 (89-235)||(5911-6057)
scaffold0390 (89-235)||(12927-13073)
[»] chr7 (10 HSPs)
chr7 (89-235)||(12751918-12752064)
chr7 (89-235)||(29328847-29328993)
chr7 (89-235)||(12739601-12739747)
chr7 (89-235)||(11535064-11535210)
chr7 (89-235)||(15153526-15153672)
chr7 (89-235)||(2652990-2653136)
chr7 (91-235)||(11541982-11542126)
chr7 (89-235)||(9978887-9979033)
chr7 (89-235)||(18562092-18562238)
chr7 (158-212)||(18256843-18256897)
[»] scaffold0213 (1 HSPs)
scaffold0213 (103-235)||(4313-4445)
[»] scaffold1199 (1 HSPs)
scaffold1199 (93-235)||(188-330)
[»] chr5 (7 HSPs)
chr5 (91-235)||(24694462-24694606)
chr5 (78-223)||(19713514-19713659)
chr5 (91-235)||(24701231-24701370)
chr5 (91-235)||(18565459-18565606)
chr5 (89-179)||(19706230-19706320)
chr5 (89-210)||(938577-938700)
chr5 (154-233)||(39539653-39539732)
[»] chr2 (4 HSPs)
chr2 (89-235)||(22790835-22790981)
chr2 (78-235)||(41664814-41664970)
chr2 (105-210)||(27353433-27353538)
chr2 (90-182)||(18620896-18620988)
[»] scaffold0220 (1 HSPs)
scaffold0220 (90-223)||(19373-19506)
[»] scaffold1303 (1 HSPs)
scaffold1303 (89-232)||(986-1128)
[»] scaffold0026 (1 HSPs)
scaffold0026 (93-235)||(26276-26418)
[»] scaffold0203 (1 HSPs)
scaffold0203 (119-235)||(29186-29302)
[»] scaffold0063 (1 HSPs)
scaffold0063 (89-235)||(6587-6733)
[»] scaffold0008 (1 HSPs)
scaffold0008 (89-235)||(229389-229535)
[»] scaffold0032 (1 HSPs)
scaffold0032 (101-235)||(107249-107383)
[»] scaffold0502 (1 HSPs)
scaffold0502 (89-231)||(105-247)
[»] scaffold0657 (1 HSPs)
scaffold0657 (183-235)||(3870-3922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (147-235)||(87829-87916)


Alignment Details
Target: scaffold0433 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 8167 - 8313
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8167 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8266  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8267 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 8313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 6111159 - 6111305
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111159 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 6111258  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  6111259 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 6111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 13212359 - 13212505
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13212359 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgct 13212458  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  13212459 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 13212505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 8491443 - 8491589
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8491443 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8491542  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8491543 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 8491589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 15600032 - 15599886
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600032 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 15599933  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  15599932 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 15599886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 10571714 - 10571568
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571714 gctctctaaaccttgttctctctgaatcttcgttggaattgactagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10571615  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10571614 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 10571568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 10578480 - 10578334
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578480 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10578381  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||| |||||||||||||||||| |||||| ||||| |||||||||||    
T  10578380 ttgttttgctcgtgatcagaaaaatttctgctacaaaggttctgctc 10578334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 15341367 - 15341221
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15341367 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcatgtggactgagtagaggcatcgctgct 15341268  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  15341267 ttgctttgctcgtgatcagaaatattttttctacaaaggttctgctc 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 15356734 - 15356588
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356734 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 15356635  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  15356634 ttgctttgctcatgatcagaaatattttttctacaaaggttctgctc 15356588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 15606577 - 15606431
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15606577 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgaagaagttctgttcgtgtggactgagtagaggcatcgctgct 15606478  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  15606477 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 15606431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 16481606 - 16481460
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16481606 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 16481507  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16481506 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 16481460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 13517868 - 13518013
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  13517868 gctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttatgttcgtgtggactgagtagaggcatcgctgct 13517967  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgct 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13517968 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgct 13518013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 18538043 - 18538200
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538043 ccctagccgtcgctctctaaaccttggtctctctgaatctccgtttgaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 18538142  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  18538143 gcatcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 18538200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 17196896 - 17196748
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |    
T  17196896 gctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaagcatcactgtt 17196797  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctcgt 237  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  17196796 ttgctttactcgtgatcagaaatatttcttctacaaaggttctgctcgt 17196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 32056207 - 32056059
Alignment:
Q  75 aagccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagta 174  Q
    |||||||||| |  ||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  32056207 aagccctagccgccgctctctaaaccttgttctctctgaatttccgttgaaattggctagcaccggtcatcagagaagttctgttcgtgtggaccgagta 32056108  T
Q  175 gaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctaca 223  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  32056107 gaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctaca 32056059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 1646644 - 1646498
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||    
T  1646644 gctctctaaaccttgttctctttgaatctccgttagaattggcttgcaccggtcatcggagaagttctgttcgtgtggactaagtagaggtatcgctact 1646545  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  1646544 ttgctttgctcgtgattagaaatatttattctacaaaggttctgctc 1646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 23014475 - 23014348
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    |||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  23014475 tctctctgaatctctgttggaattggcttgcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgccgctttgctttgctcgtgat 23014376  T
Q  205 cagaaatatttcttctacacaggttctg 232  Q
    || ||||||||||| |||| ||||||||    
T  23014375 cataaatatttcttatacaaaggttctg 23014348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 13258661 - 13258746
Alignment:
Q  146 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttct 231  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13258661 ggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttct 13258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 16201309 - 16201420
Alignment:
Q  120 gttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttc 219  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| | |    
T  16201309 gttggaattggcttgcactggtcatcggataagttctgttcgtgtggactgagtagaggcatcactgctttgcttttctcgtgatcagaaacatttatgc 16201408  T
Q  220 tacacaggttct 231  Q
    |||| |||||||    
T  16201409 tacaaaggttct 16201420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 17780246 - 17780165
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  17780246 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 17780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 19081547 - 19081466
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  19081547 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 19081466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 25801252 - 25801392
Alignment:
Q  88 tgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    ||||||||||||  | |||||||||||||| ||||| ||||| ||||||||  ||| |||| ||||| ||||||||||||||| |||||||| ||||| |    
T  25801252 tgctctctaaaccctattctctctgaatctccgttgaaattgcctagcacca-tcaccggataagttatgttcgtgtggactgggtagaggcgtcgctac 25801350  T
Q  188 tttgctttgctcgtgatcagaaatatttcttctacacaggtt 229  Q
     ||||||||||||| |||||||| | |||| ||||| |||||    
T  25801351 attgctttgctcgtaatcagaaacaattctgctacaaaggtt 25801392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 17137439 - 17137505
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttct 156  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  17137439 ctctctaaactttgttctctttgaatctccgttggaattggctagcaccagtcatcggagaagttct 17137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 54333264 - 54333200
Alignment:
Q  141 tcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 205  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||| | ||||| |||||||||||||    
T  54333264 tcatcagagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgatc 54333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 17690588 - 17690442
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690588 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 17690489  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  17690488 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 17690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 27278426 - 27278572
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278426 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27278525  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  27278526 ttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27278572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 27297718 - 27297864
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297718 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27297817  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  27297818 ttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27297864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 27303317 - 27303463
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303317 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27303416  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  27303417 ttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27303463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 27380375 - 27380229
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27380375 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 27380276  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27380275 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 27380229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 27470758 - 27470612
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27470758 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 27470659  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27470658 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 27470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 29309949 - 29310095
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29309949 gctctctaaaccttgttatctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgct 29310048  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  29310049 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29310095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 17683605 - 17683459
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17683605 gctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 17683506  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17683505 ttgctttgctcgtgatcagaaatatttctgctacaaaggttctgctc 17683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 29316908 - 29317054
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29316908 gctctctaaaccttgttatctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgct 29317007  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  29317008 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29317054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 11652757 - 11652903
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||    
T  11652757 gctctctaaaccttcttctttctgaatctccgttggaattggctagcaccggtcatcagagaagtacagtttgtgtggactgagtagaggcatcgctgct 11652856  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  11652857 ttgctttactcgtgatcagaaatatttcttctacaaaggttctgctc 11652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 18336648 - 18336794
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||  |||||||| |||||||||||||||||||||| |||||||       
T  18336648 gctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagttatgttcgtgtggactgagtagagacatcgctatg 18336747  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||| ||||||||||| |||| | ||||| |||||||||||    
T  18336748 ttgctttgcttgtgatcagaaacatttatgctacaaaggttctgctc 18336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 28755386 - 28755282
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    ||||||| || |||||||||||||||||||||||| ||||  || ||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  28755386 tctctctcaaccttcgttggaattggctagcaccgatcattaga-aagttctattcgtgtggactgagtagagacattgctactttgatttgctcgtgat 28755288  T
Q  205 cagaaa 210  Q
    ||||||    
T  28755287 cagaaa 28755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 16393538 - 16393506
Alignment:
Q  178 gcatcgctgctttgctttgctcgtgatcagaaa 210  Q
    |||||||| ||||||||||||||||||||||||    
T  16393538 gcatcgctactttgctttgctcgtgatcagaaa 16393506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 18253089 - 18253235
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253089 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 18253188  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  18253189 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 18253235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 18531661 - 18531519
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18531661 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgct 18531562  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttct 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  18531561 ttgctttgctcgtgatcagaaatatttcttctacaaaggttct 18531519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 27309701 - 27309555
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||    
T  27309701 gctctctaaaccttgttctctttgaatctccgttgaaattggctagcaccggtcatcggagaggttcttttcgtgtggactgagtagaggcatcgctact 27309602  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27309601 ttgctttgctcgtgatcagaaatatttcttctacaaaggttttgctc 27309555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 9076025 - 9075879
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||| |||||| |||||||||||| |||||||    
T  9076025 gctctctaaacctcgttctctttgaatctccgttggaattggctagcaccgatcataggagacgttctgttcatgtggaatgagtagaggcaacgctgct 9075926  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||    
T  9075925 ttgctttgctcgtgatcagaaataattcttctacaaagattctgctc 9075879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 16358191 - 16358035
Alignment:
Q  81 tagctgttgctctctaaactttgttctctctgaatcttcgttggaattgg-ctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||| ||||||||||| ||||||||| ||||||  |||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  16358191 tagctgtcgctctctaaacgttgttctctttgaatccccgttggaattggtctatcaccggtcttcggagaagttctgttcttgtggactgagtagaggc 16358092  T
Q  180 atcgctgctttgctttgc-tcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||| |||| | ||||||||| |||||||||||||||| |||||||||||    
T  16358091 atcgctgcttttcttttcttcgtgatcataaatatttcttctacaaaggttctgctc 16358035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 21169500 - 21169411
Alignment:
Q  146 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21169500 ggagaagttctgttcgtgtggactgagtagaggcatcgttgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 21169411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 27130532 - 27130442
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27130532 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcttcggagaagttctgttcgtgtggactgagtagaggc 27130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 22640984 - 22640856
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||||||||||||||||  |||||  |||||||||||  ||| ||||| |||||||||||||||| | |||||||||||||||    
T  22640984 ttctctctgaatctctgttggaattggctagcactagtcataagagaagttctgaacgtctggacagagtagaggcatcgctacgttgctttgctcgtga 22640885  T
Q  204 tcagaaatatttcttctacacaggttctg 232  Q
    ||||||| | |||| ||||| ||||||||    
T  22640884 tcagaaacaattctgctacaaaggttctg 22640856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 1467 - 1319
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1467 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 1368  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctcgt 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1367 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 10360 - 10212
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10261  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctcgt 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10260 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 5344 - 5198
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5344 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5245  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5244 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 5198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 22172544 - 22172690
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22172544 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 22172643  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22172644 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 22172690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 6095205 - 6095351
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  6095205 gctctctaaaccttcttctctctgaatcttcattggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgtt 6095304  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  6095305 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 6095351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 21941726 - 21941872
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941726 gctctctaaaccttgttctctctgaatcttcgttggaattagctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 21941825  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  21941826 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 21941872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 15327271 - 15327428
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  15327271 ccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagag 15327370  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  15327371 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttcagctc 15327428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 15507640 - 15507797
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  15507640 ccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagag 15507739  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  15507740 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttcagctc 15507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 24644007 - 24644153
Alignment:
Q  88 tgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    |||||||||||| | || |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24644007 tgctctctaaacctagt-ctctctgaatctccgttgtaattggctagcatcggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 24644105  T
Q  188 tttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    | |||||||||||||||||||||||||| || |||| |||||||||||    
T  24644106 tctgctttgctcgtgatcagaaatatttgttatacaaaggttctgctc 24644153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 28549107 - 28549203
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||| | |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28549107 gctctctaaacctggttctctctgaatctctgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 28549203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 24796114 - 24796039
Alignment:
Q  109 tctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24796114 tctgaatcttcgttgaaattagctagcaccggtcatcggagaagttctgttcg-gtggactcagtagaggcatcgct 24796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 29230479 - 29230568
Alignment:
Q  95 taaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||| ||||||||||| ||||| |||||||||||||||| || | | ||| |||||||||| |||||||||||| |||||||||||||||    
T  29230479 taaaccttgttctctcttaatctccgttggaattggctagtactgtt-atcagagaagttcttttcgtgtggactaagtagaggcatcgct 29230568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 18263271 - 18263419
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18263271 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggataagttctgttcgtgtggactgagtagaggcatcgctgct 18263370  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctcgt 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18263371 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 18263419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 18270132 - 18270280
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270132 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 18270231  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctcgt 237  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  18270232 ttgctttgctcgtgatcagaaatatttcttctataaaggttctgctcgt 18270280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 8859251 - 8859397
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859251 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8859350  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  8859351 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 8859397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 869680 - 869826
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869680 gctctctaaacatagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 869779  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||    
T  869780 ttgctttgctcgtgatcagaaatatttcttctacaaatgttctgctc 869826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 5715032 - 5715178
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715032 gctctctaaacgtagttctctctgaatctccgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5715131  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5715132 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 5715178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 26964630 - 26964776
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964630 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 26964729  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||| | ||||| |||||||||||    
T  26964730 ttgctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 26964776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 26971524 - 26971670
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971524 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 26971623  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||| | ||||| |||||||||||    
T  26971624 ttgctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 26971670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 55613767 - 55613913
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55613767 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 55613866  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  55613867 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 55613913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 5708385 - 5708542
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| | |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708385 ccctagccgctgctctctaaacgtagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 5708484  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||    
T  5708485 gcatcgctgctttgctttgctcgtgatcagaaatatttcttatacaaagattctgctc 5708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 19919654 - 19919508
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919654 gctctctaaaccttcttctctctgaatctccgttgaaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 19919555  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19919554 ttgctttgctcgtgatcagaaatatttcttctacaaaggttgtgctc 19919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 19925883 - 19925737
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19925883 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcattgctgct 19925784  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19925783 ttgctttgctcgtgatcagaaatatttcttctacaaaggttgtgctc 19925737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 10620467 - 10620310
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10620467 ccctagccgtcgctctctaaaccttgttctctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagag 10620368  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10620367 gcatcgctgctttgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10620310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 10627549 - 10627392
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10627549 ccctagccgtcgctctctaaaccttgttctctctgaatctccattggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagag 10627450  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10627449 gcatcgctgctttgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10627392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 28392301 - 28392144
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  28392301 ccctagctgccgctctttaaaccttcttctctctgaatctccgttggaattggctagcaccagtcatcggagaagtactgttcgtgtggactgagtagag 28392202  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28392201 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 28392144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 4425763 - 4425629
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4425763 gctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgct 4425664  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctaca 223  Q
    |||||||||||||||| ||||||||||||||||||    
T  4425663 ttgctttgctcgtgattagaaatatttcttctaca 4425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 47388077 - 47387932
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |    
T  47388077 ctctctaaacctttttctcactgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatgt 47387978  T
Q  190 tgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||| | || | ||||| |||||||||||    
T  47387977 tgctttgctcgtgatcagaaacaattatgctacaaaggttctgctc 47387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 10676697 - 10676570
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10676697 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10676598  T
Q  204 tcagaaatatttcttctacacaggttct 231  Q
    ||||||| | || | ||||| |||||||    
T  10676597 tcagaaacaattatgctacaaaggttct 10676570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 10890337 - 10890210
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10890337 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10890238  T
Q  204 tcagaaatatttcttctacacaggttct 231  Q
    ||||||| | || | ||||| |||||||    
T  10890237 tcagaaacaattatgctacaaaggttct 10890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 35224612 - 35224732
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    ||||||||||  | |||| ||||||| | ||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |   |    
T  35224612 ctctctaaaccctattctttctgaatatccgttggaattgactagcacgggtcatcgaagaagctctgttcgtgtggactgagtagaggcatcgatatct 35224711  T
Q  190 tgctttgctcgtgatcagaaa 210  Q
    |||||||||||||||||||||    
T  35224712 tgctttgctcgtgatcagaaa 35224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 20579488 - 20579418
Alignment:
Q  161 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttct 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  20579488 gtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaattatttcttctacaaaggttct 20579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 10825391 - 10825329
Alignment:
Q  173 tagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10825391 tagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 10690368 - 10690423
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 159  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10690368 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10690423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 10904008 - 10904063
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 159  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10904008 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10904063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 6057 - 5911
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5958  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  5957 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 13073 - 12927
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 12974  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  12973 ttgctttgctcgtgatgagaaagatttctgctacaaaggttctgctc 12927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 12751918 - 12752064
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12751918 gctctctaaaccttgttctctctaaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggacggagtagaggcatcgctgct 12752017  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  12752018 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 12752064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 29328847 - 29328993
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  29328847 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcagagaagttatgttcgtgtgaactgagtagaggcatcgctgct 29328946  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  29328947 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29328993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 12739601 - 12739747
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  12739601 gctctctaaaccttgttctctcttaatctccgttggaattggctagcaccggtcatcggagaagttctgtttttgtggactgagtagaggcatcgctgct 12739700  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  12739701 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 12739747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 11535210 - 11535064
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11535210 gctctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgctgct 11535111  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  11535110 ttgctttgctcgtgatcagaaagatttctactacaaaggttctgctc 11535064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 15153526 - 15153672
Alignment:
Q  89 gctctctaaac-tttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  15153526 gctctctaaacatttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgcttc 15153625  T
Q  188 tttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  15153626 tttgctttgctcgtgatcagaaatattt-ttctacaaaggttctgctc 15153672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 2653136 - 2652990
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2653136 gctctctaaaccttgttctctctgattctctgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 2653037  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  2653036 ttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 2652990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 11542126 - 11541982
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11542126 tctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcaccggagaagttctgttcgtgtggactgagtagaggtatcgctgcttt 11542027  T
Q  191 gctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||    
T  11542026 gctttgctcgtgatcagaaagatttctactacaaaggttctgctc 11541982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 9978887 - 9979033
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||  |    
T  9978887 gctctctaaaccttcttctctctgaatcttcgttggaattggctagcaccggtcatcgaaaaagttctgttcgtgtggactaagtagaggcatcgctatt 9978986  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  9978987 ttgctttgctcgtgatcagaaatagttctactacaaaggttctgctc 9979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 18562092 - 18562238
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |    
T  18562092 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtagactaagtagaggcatcgctgtt 18562191  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||| ||||| |||| ||||| |||||||||||    
T  18562192 ttgctttgctcgtgatcaaaaataattctactacaaaggttctgctc 18562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 18256897 - 18256843
Alignment:
Q  158 ttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaata 212  Q
    |||||||||||| |||| ||| |||||| | ||||||||||||||||||||||||    
T  18256897 ttcgtgtggactaagtataggtatcgctacgttgctttgctcgtgatcagaaata 18256843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 4313 - 4445
Alignment:
Q  103 gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4313 gttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 4412  T
Q  203 atcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||| |||||||||||    
T  4413 atcagaaatatttcttctacaaaggttctgctc 4445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 188 - 330
Alignment:
Q  93 tctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 192  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  188 tctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagacatcgctgctttgc 287  T
Q  193 tttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  288 tttgcttgtgatcagaaatatttcttctacaaaggttctgctc 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 24694606 - 24694462
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694606 tctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 24694507  T
Q  191 gctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||    
T  24694506 gctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 24694462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 19713659 - 19713514
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  19713659 ccctagctgccgctctctaaacctttttctctctgaatctccgttggaattggctagcaccagtcatcggagaagttctgttcatgtggactaagtagag 19713560  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctaca 223  Q
    |||||| || ||||||||||||||||||||||||| |||| |||||    
T  19713559 gcatcgttgttttgctttgctcgtgatcagaaataattctactaca 19713514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 24701370 - 24701231
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  24701370 tctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctattcgtgtggactgagtagaggcatcgctgctt- 24701272  T
Q  191 gctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
        |||||||||||||||| |||||| ||||| |||||||||||    
T  24701271 ----tgctcgtgatcagaaagatttctgctacaaaggttctgctc 24701231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 18565606 - 18565459
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggt--catcggagaagttctgttcgtgtggactgagtagaggca--tcgctg 186  Q
    ||||||||| ||||||| | ||||||| |||||||||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||  ||||||    
T  18565606 tctctaaaccttgttctatttgaatctccgttggaattggctagcaccggtcacatcagagaagttttgtttgtgtggactgagtagaggcatctcgctg 18565507  T
Q  187 ctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  18565506 ctttgctttgctcgtgatcagaaatattt-ttctacaaaggttctgctc 18565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 19706320 - 19706230
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||||||| || |||||||| ||| |  |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  19706320 gctctctaaaccttcttctctctaaatatctgttgaaattggctagcaccggtcatcggagaagttatgttcgtgtggactaagtagaggc 19706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 938700 - 938577
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc---ggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||| || |||||||| ||||| ||||||||| |||||||||||||||||   | |||||||||||||||||||| |||||||| ||||||||    
T  938700 gctctctaaaccttattctctct-aatctccgttggaatcggctagcaccggtcatcatcgtagaagttctgttcgtgtggattgagtagaagcatcgct 938602  T
Q  186 gctttgctttgctcgtgatcagaaa 210  Q
     | ||| |||| | |||||| ||||    
T  938601 acgttgttttgtttgtgatcggaaa 938577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 39539653 - 39539732
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgc 233  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||| |||||||||||   |||| ||||| |||||||||    
T  39539653 tctgtttgtgtggactgagtagagacatcgctacgttgctttgcttgtgatcagaaactattctgctacaaaggttctgc 39539732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 22790981 - 22790835
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    |||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22790981 gctctctatactttgttctctttgaatctccgtgggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgcttct 22790882  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22790881 ttgctttgctcgtcatcagaaatatttcttctacaaaggttctgctc 22790835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 41664814 - 41664970
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || | ||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||     
T  41664814 ccctagccgtcgttctctaaaccttgttctctccgaatctccgttggaattggctagcaccgatcatcggggaa-ttctgttcgtgtggactaagtagaa 41664912  T
Q  178 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||| | ||||| |||||||||||||||| | |||| ||||| | |||||||||    
T  41664913 gcatcgctacgttgctatgctcgtgatcagaaacaattctactacaaatgttctgctc 41664970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 27353433 - 27353538
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    ||||||||||||| || ||||||||||| | |||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||    
T  27353433 tctctctgaatctccgctggaattggctcgtaccggtcatcagagaagttctctacgtgtggactgagtagaggcatcgctacgttgctttgctcgtgat 27353532  T
Q  205 cagaaa 210  Q
    ||||||    
T  27353533 cagaaa 27353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 18620896 - 18620988
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatc 182  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||    
T  18620896 ctctctaaactttgttctatctgaatctctgttggaattggctagcaccagtcatcggagaaattctgttcgtgtggactgagtggagacatc 18620988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 19373 - 19506
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19373 ctctctaaacgtagttctctctgaatctccgttgtaattggctagcaccggtcatcggagaagttctgttcatgtggactgagtagaggcatcgctgctt 19472  T
Q  190 tgctttgctcgtgatcagaaatatttcttctaca 223  Q
    ||||||||||||||||||||||||||||||||||    
T  19473 tgctttgctcgtgatcagaaatatttcttctaca 19506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 1128 - 986
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  1128 gctctctaaacttagt-ctctctgaatcaccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtggactgagtagagacatcgctgct 1030  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctg 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  1029 ttgctttgctcgtgatcagaaatatttcttctacaaaggttctg 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 26276 - 26418
Alignment:
Q  93 tctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 192  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26276 tctaaactttgttctctctgaatctttgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgc 26375  T
Q  193 tttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||| |||| ||||| |||| | ||||| |||||||||||    
T  26376 tttgctcatgataagaaaaatttatactacaaaggttctgctc 26418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 29302 - 29186
Alignment:
Q  119 cgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttctt 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  29302 cgttggaattggctagcaccggccatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctg 29203  T
Q  219 ctacacaggttctgctc 235  Q
    ||||| |||||||||||    
T  29202 ctacaaaggttctgctc 29186  T

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Target: scaffold0063 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 6587 - 6733
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  |    
T  6587 gctctctaaaccttgttctctttgaatctccattggaattggctagcaccagtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatt 6686  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||| |||||| |||| ||||| |||||||||||    
T  6687 ttgctttgctcgtgatctgaaataattctactacaaaggttctgctc 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 229535 - 229389
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| | ||| || ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  |    
T  229535 gctctctaaaccttgttctctttgaatctccattgaaactggctagcaccggtcatcggagaagttctgttcatgtggactaagtataggcatcgctatt 229436  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||||||||||||||||||| ||||  |||| |||||||||||    
T  229435 ttgctttgctcgtgatcagaaataattctagtacaaaggttctgctc 229389  T

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Target: scaffold0032 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 107383 - 107249
Alignment:
Q  101 ttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcg 200  Q
    ||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||| ||||||  |||||||||| ||| | |||||||||| |    
T  107383 ttgttctctctgaatctccgttggaattggctgacactggtcatcggagaagttctgttcgtttggactatgtagaggcattgctacgttgctttgcttg 107284  T
Q  201 tgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||  ||| | |||||||||| ||||| |||||    
T  107283 tgatcgtaaacaattcttctacaaaggttatgctc 107249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 105 - 247
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||  |||||||| ||||||| |||||||||||||| |||||||       
T  105 gctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagttatgttcgtatggactgagtagagacatcgctatg 204  T
Q  189 ttgctttgctcgtgatcagaaatatttcttctacacaggttct 231  Q
    ||  |||||| ||||| ||||| |||| | ||||| |||||||    
T  205 tttgtttgcttgtgattagaaacatttttgctacaaaggttct 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 3870 - 3922
Alignment:
Q  183 gctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3870 gctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 3922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 87829 - 87916
Alignment:
Q  147 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 235  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||| ||||||| ||||||| ||| | || | ||||| |||||||||||    
T  87829 gagaagttatgttcgt-tggactaagtagaggcatcgctactttactttgcttgtgatcataaacaattatactacaaaggttctgctc 87916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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