View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_37 (Length: 296)
Name: NF0668_low_37
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 29165805 - 29166076
Alignment:
| Q |
20 |
gacatcatcactaacttcattggttcaaatgatcaatttctagatgtttcactaagcctttgagaggtccttgtataagcaatacaagtaacaagcttga |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29165805 |
gacatcatcactaacttcgttggttcaaatgatcaatttctagatgtttcactaagcctttgagaggtccttgtataagcaatacaagtaacaagcttga |
29165904 |
T |
|
| Q |
120 |
tgcatatgatttatatgctctaaagtgatgagcttgttaaaaataatgtaattatggtagctatggttgtacagcatcatgtaaatatagtatatagggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29165905 |
tgcatatgatttatatgctctaaagtgatgagcttgttaaaaataatgtaattatggtagctatggttgtacagcatcatgtaaatatagtatatagggt |
29166004 |
T |
|
| Q |
220 |
aatgtaagtttttgtatttagtgttact--------atgtgtggattcactcatacactctttcattgtcct |
283 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29166005 |
aatgtaagtttttgtatttagtgttactatgtgtgcatgtgtggattcactcatacactctttcattgtcct |
29166076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 18071982 - 18071950
Alignment:
| Q |
107 |
gtaacaagcttgatgcatatgatttatatgctc |
139 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
18071982 |
gtaacaagcttgatgcatatgatttatatgctc |
18071950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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