View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_low_38 (Length: 295)

Name: NF0668_low_38
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_low_38
NF0668_low_38
[»] chr5 (2 HSPs)
chr5 (244-285)||(15237854-15237895)
chr5 (244-285)||(15237741-15237782)
[»] chr7 (4 HSPs)
chr7 (244-285)||(18424735-18424776)
chr7 (21-58)||(2531339-2531376)
chr7 (244-285)||(18424622-18424663)
chr7 (244-285)||(26291403-26291444)
[»] chr6 (4 HSPs)
chr6 (21-58)||(14470916-14470953)
chr6 (245-285)||(16623176-16623216)
chr6 (244-285)||(18918400-18918441)
chr6 (244-285)||(1643581-1643622)
[»] chr4 (2 HSPs)
chr4 (244-285)||(15223933-15223974)
chr4 (244-285)||(27532970-27533011)
[»] chr3 (3 HSPs)
chr3 (244-285)||(16751554-16751595)
chr3 (244-285)||(19774569-19774610)
chr3 (244-285)||(4589867-4589908)
[»] chr1 (4 HSPs)
chr1 (244-285)||(39244865-39244906)
chr1 (244-285)||(39248420-39248461)
chr1 (244-285)||(41389313-41389354)
chr1 (244-285)||(20229925-20229966)
[»] scaffold0525 (1 HSPs)
scaffold0525 (21-58)||(5537-5574)
[»] chr2 (1 HSPs)
chr2 (21-58)||(31343952-31343989)
[»] scaffold0200 (1 HSPs)
scaffold0200 (244-284)||(11123-11163)
[»] scaffold0410 (1 HSPs)
scaffold0410 (21-58)||(14879-14916)
[»] scaffold0029 (2 HSPs)
scaffold0029 (244-285)||(62552-62593)
scaffold0029 (244-285)||(66468-66509)
[»] chr8 (1 HSPs)
chr8 (244-285)||(15924281-15924322)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 15237895 - 15237854
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15237895 gtattcatcatcttatgaaaacataacgacaacatattcata 15237854  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 15237782 - 15237741
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15237782 gtattcatcatcttatgaaaacataacaacaacatattcata 15237741  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 18424735 - 18424776
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  18424735 gtattcatcatcttatgaaaacataacaacaacatattcata 18424776  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 2531376 - 2531339
Alignment:
Q  21 acatcatcaagtacacctaacaactcataaatatcttc 58  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2531376 acatcatcaagtacacctaacaactcatagatatcttc 2531339  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 18424622 - 18424663
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  18424622 gtattcatcatcttatgaaaacatagcaacaacatattcata 18424663  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 26291403 - 26291444
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  26291403 gtattcatcatcttatgaaaatataacaataacatattcata 26291444  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 14470916 - 14470953
Alignment:
Q  21 acatcatcaagtacacctaacaactcataaatatcttc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14470916 acatcatcaagtacacctaacaactcataaatatcttc 14470953  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 16623176 - 16623216
Alignment:
Q  245 tattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  16623176 tattcatcatcttatgaaaacataacaacaacatattcata 16623216  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 18918441 - 18918400
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  18918441 gtattcatcatcttatgaaaatataacaacaacatattcata 18918400  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 1643581 - 1643622
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  1643581 gtattcatcatcttatgaaaatataacaataacatattcata 1643622  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 15223933 - 15223974
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15223933 gtattcatcatcttatgaaaacataacaacaacatattcata 15223974  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 27532970 - 27533011
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||    
T  27532970 gtattcatcatcttatgaaaatataacaacaacgtattcata 27533011  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 16751595 - 16751554
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  16751595 gtattcatcatcttatgaaaacataacaacaacatattcata 16751554  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 19774569 - 19774610
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  19774569 gtattcatcatcttatgaaaacataacaacaacatattcata 19774610  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 4589908 - 4589867
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  4589908 gtattcatcatcttatgaaaatatcacaacaacatattcata 4589867  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 39244906 - 39244865
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  39244906 gtattcatcatcttatgaaaacataacaacaacatattcata 39244865  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 39248461 - 39248420
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  39248461 gtattcatcatcttatgaaaacataacaacaacatattcata 39248420  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 41389354 - 41389313
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41389354 gtattcatcatcttatgaaaacataacaacaacatattcata 41389313  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 20229966 - 20229925
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  20229966 gtattcatcatcttatgaaaatataacaataacatattcata 20229925  T

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Target: scaffold0525 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 5574 - 5537
Alignment:
Q  21 acatcatcaagtacacctaacaactcataaatatcttc 58  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5574 acatcatcaagtacacctaagaactcataaatatcttc 5537  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 31343952 - 31343989
Alignment:
Q  21 acatcatcaagtacacctaacaactcataaatatcttc 58  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31343952 acatcatcaagtacacctaacaactcatagatatcttc 31343989  T

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Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 11123 - 11163
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcat 284  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  11123 gtattcatcatcttatgaaaatataacaacaacatattcat 11163  T

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Target: scaffold0410 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0410
Description:

Target: scaffold0410; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 14879 - 14916
Alignment:
Q  21 acatcatcaagtacacctaacaactcataaatatcttc 58  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  14879 acatcatcaagtacacttaacaactcatagatatcttc 14916  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 62593 - 62552
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||    
T  62593 gtattcaacatcttatgaaaatataacaacaacatattcata 62552  T

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Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 66509 - 66468
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||    
T  66509 gtattcaacatcttatgaaaatataacaacaacatattcata 66468  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 15924322 - 15924281
Alignment:
Q  244 gtattcatcatcttatgaaaacataacgacaacatattcata 285  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  15924322 gtattcatcatcttatgaaaatataacaataacatattcata 15924281  T

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