View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_39 (Length: 292)
Name: NF0668_low_39
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 37 - 281
Target Start/End: Original strand, 7305648 - 7305892
Alignment:
| Q |
37 |
gtatacaaggtgcacatgcccttgcacgatcaaatagtttccggacttcacgctcgctttctccaacatatttatttagaagctcaggaccctaaaaacc |
136 |
Q |
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| T |
7305648 |
gtatacaaggtgcacatgcccttgcacgatcaaataatttccggacttcacgctcgctttctccaacatatttatttagaagctcaggaccctaaaaacc |
7305747 |
T |
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| Q |
137 |
caacaaaagcaattaaaatattcaaaactaattcatcatttgagacaaagcaacattctacaaaccagactaatgagaaatggatggaatatatagacag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7305748 |
caacaaaagcaattaaaatattcaaaactaattcatcatttgagacaaagcaacattctacaaaccagactaatgagaaatggatggaatatatagacag |
7305847 |
T |
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| Q |
237 |
accttaatataaatgaaattagctccggcttcattggcaacagct |
281 |
Q |
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| T |
7305848 |
accttaatataaatgaaattagctccggcttcattggcaacagct |
7305892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 281
Target Start/End: Original strand, 7296331 - 7296577
Alignment:
| Q |
37 |
gtatacaaggtgcacatgcccttgcacgatcaaatagtttccggacttcacgctcgctttctccaacatatttatttagaagctcaggaccctaaaaacc |
136 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7296331 |
gtatacatggtgcacatgcccttgcacgatcaaataatttccggactccacaatcgctttctccaacatatttatttagaagctcaggaccctaaaagac |
7296430 |
T |
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| Q |
137 |
caacaaaagcaattaaaatattcaaaactaattcatcatttgagacaaagcaacattctacaaaccagac---taatgagaaatggatggaatatataga |
233 |
Q |
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| T |
7296431 |
caaaaaaatcaactaaattattcaaaattaattcatcatctgagacaacgcaacgttcta-taaccaaactattattgagaaatggatggaatatttaga |
7296529 |
T |
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| Q |
234 |
cagaccttaatataaatgaaattagctccggcttcattggcaacagct |
281 |
Q |
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| T |
7296530 |
cagaccttaatataaatgaaattagctccggcttcattggcaacagct |
7296577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 789887 - 789816
Alignment:
| Q |
209 |
atgagaaatggatggaatatatagacagaccttaatataaatgaaattagctccggcttcattggcaacagc |
280 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
789887 |
atgataaaaggatggaatatttagacagaccttaatatgaatgaaattagctcctgcctcattggcaacagc |
789816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 790055 - 789969
Alignment:
| Q |
45 |
ggtgcacatgcccttgcacgatcaaatagtttccggacttcacgctcgctttctccaacatatttatttagaagctcaggaccctaa |
131 |
Q |
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| T |
790055 |
ggtgcacaagtccttgcccgattaaacaatgtccgcactgcaagctcgctttccccaacatatttatttagaagctcgggtccctaa |
789969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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