View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_40 (Length: 292)
Name: NF0668_low_40
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_40 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 64 - 235
Target Start/End: Complemental strand, 22165 - 21994
Alignment:
| Q |
64 |
catcatcatcggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaatttttac |
163 |
Q |
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| T |
22165 |
catcaccatcggacaaaaaactgttgagacaggtcgaaccgatggtaacataatcattgattcagggacaacattgacgtatcttgaacaaaacttttac |
22066 |
T |
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| Q |
164 |
aatgatttggtagcttccttgaagggagttattggtgttgaggaagtgaaagatcctcaatccccatatacc |
235 |
Q |
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| T |
22065 |
aatgatttggtagcttccttaaagggagttattggtgttgaggaagtgaaagatcctccatccccatatacc |
21994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 14117 - 13956
Alignment:
| Q |
74 |
ggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaatttttacaatgatttgg |
173 |
Q |
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| T |
14117 |
ggacaaaaaacggctcagtcaggtcaaactgatggtaatataatcattgattcaggtacaacattgacgtatcttgaaccaaaattttataacgatttca |
14018 |
T |
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| Q |
174 |
tagcttccttgaagggagttattggtgttgaggaagtgaaagatcctcaatccccatatacc |
235 |
Q |
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| T |
14017 |
tagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatttacc |
13956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 41523 - 41658
Alignment:
| Q |
74 |
ggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaatttttacaatgatttgg |
173 |
Q |
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| T |
41523 |
ggacaaaaaacaattcagacaggtcaaatcgatggcaacataatcattgattcagggacaacgttgacgtatcttgaacaaccctttttcgatgattttg |
41622 |
T |
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| Q |
174 |
tagcttccttgaagggagttattggtgttgaggaag |
209 |
Q |
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| T |
41623 |
taacttccgtgaaggaagctattggtcttgaggaag |
41658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 26464326 - 26464184
Alignment:
| Q |
75 |
gacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaatttttacaatgatttggt |
174 |
Q |
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|||||||||| || ||||||||| ||| ||||| |||||||||||||||||||||||| |||||| ||||| |||||| |||| | ||||||| | |
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| T |
26464326 |
gacaaaaaacaattcagacaggtcaaattgatggcaacataatcattgattcagggacagcattgatgtatctcgaacaaccctttttcgatgatttttt |
26464227 |
T |
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| Q |
175 |
agcttccttgaagggagttattggtgttgaggaagtgaaagat |
217 |
Q |
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|||||| |||||| |||||||| | ||||||||||| ||||| |
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| T |
26464226 |
agcttcggtgaaggaagttattgatattgaggaagtggaagat |
26464184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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