View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_43 (Length: 285)
Name: NF0668_low_43
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 46360377 - 46360200
Alignment:
| Q |
64 |
ccgcgaagcaaaaattagatggaggtagtgcgatactagtacgattagtagtagcaacaaacaagtagagaagacagaaaaaactgggacatttctcaat |
163 |
Q |
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| T |
46360377 |
ccgcgaagcaaaaattagatggaggtagtgcgatactggtacgattagtagtagcaacaaacaagtagagaagacagaaaaaagtgggacatttctcaat |
46360278 |
T |
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| Q |
164 |
tctcaccccatttcctcatgcctgtaggattcgatcttttgccaacagccaaatacttttctttgcattcatattctt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46360277 |
tctcaccccatttcctcatgcctgtaggattcgatcttttgccaacagccaaatacttttctttgcattcattttctt |
46360200 |
T |
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