View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0668_low_47 (Length: 278)
Name: NF0668_low_47
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 40140095 - 40140275
Alignment:
| Q |
57 |
ataaattgccaccttcaggaatgtcagctgctatgacagcaacctctgctaataaccataagcaatacttcacaaataatggatattcaacttcacatac |
156 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40140095 |
ataaattgctaccttcaggtatgtcagctgctatgacagcaacctctgctaataaccataagcaatacttcacaaataatggatattcaacttcacatac |
40140194 |
T |
|
| Q |
157 |
ttctgaaaggtgtttgcctgccaaatgtaaataataaaagttagtattctcagagaaaagtatcttactgtctcatttctt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40140195 |
ttctgaaaggtgtttgcctgccaaatgtaaataataaaagttagtattctcagagaaaagtatcttactgtctcatttctt |
40140275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 40129074 - 40129189
Alignment:
| Q |
66 |
caccttcaggaatgtcagctgctatgacagcaacctctgctaataaccataagcaatacttcacaaataatggatattcaacttcacatacttctgaaag |
165 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| |||||||||| |||||| || || |||||||| |||| || ||| ||| ||| | ||||||||| |
|
|
| T |
40129074 |
caccttcaggtatgtctgcagctatgacagcaagttctgctaatatccataaacagtatttcacaaaccatgggtactcagctttacaaatttctgaaag |
40129173 |
T |
|
| Q |
166 |
gtgtttgcctgccaaa |
181 |
Q |
| |
|
|||||| |||| |||| |
|
|
| T |
40129174 |
gtgtttacctgtcaaa |
40129189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1358 times since January 2019
Visitors: 4117