View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_50 (Length: 274)
Name: NF0668_low_50
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_50 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 44 - 274
Target Start/End: Complemental strand, 3377018 - 3376788
Alignment:
| Q |
44 |
catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagacaaacttcttaattgatttggtgattgaaaagg |
143 |
Q |
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| T |
3377018 |
catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagagaaacttcttaattgatttggtgattgaaaagg |
3376919 |
T |
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| Q |
144 |
acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtgattgaattcttggcaatagattttggtaacttc |
243 |
Q |
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| T |
3376918 |
acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtgattgaattcttggcaatagattttggtaacttc |
3376819 |
T |
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| Q |
244 |
tcctcgatcatattagaccatgtcttcacct |
274 |
Q |
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| T |
3376818 |
tcctcgatcatattagaccatgtcttcacct |
3376788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 2372487 - 2372397
Alignment:
| Q |
95 |
cattaacatcaaaagacaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
185 |
Q |
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|||| ||||||||||| || ||| | || ||||| || ||| |||||||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
2372487 |
cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
2372397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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