View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_54 (Length: 271)
Name: NF0668_low_54
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 12827141 - 12827226
Alignment:
| Q |
153 |
ttacctgagtaacaattctaaccgaagaagattcaacttcagaatacctatcacaaaccgcaccagaagaaccaaacaactcccct |
238 |
Q |
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| T |
12827141 |
ttacctgagtaacaattctaaccgaagaagattcaacttcagaatacctatcacaaaccgcaccagaagaaccaaacaactcccct |
12827226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 12827059 - 12827096
Alignment:
| Q |
41 |
acatcatcctacaaataaccacacaatcaatcacactt |
78 |
Q |
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| T |
12827059 |
acatcatcctacaaataaccacacaatcaatcacactt |
12827096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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