View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0668_low_56 (Length: 266)
Name: NF0668_low_56
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_56 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 266
Target Start/End: Original strand, 45270382 - 45270596
Alignment:
| Q |
53 |
aaaccacttcacaatcaatccccttttaactaaaactaaaaccaatttttataaacaaaaaattacaactaaatatccactttatggtgttccattccga |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45270382 |
aaaccacttcacaatcaatccccttttaactaaaactaaaaccaatttttataaacaaaaaattacaactaaatatctactttatggtgttccattccga |
45270481 |
T |
|
| Q |
153 |
ttttgcaggaaaaccagtgattgttgatgctgataaagttacaacacttgaaagagcaagatctttcaaaacatgtaatccatcctttg-tgttgtcatg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45270482 |
ttttgcaggaaaaccagtgattgttgatgctgataaagttacaacacttgaaagagcaaaatctttcaaaacatgtaatccatcctttgttgttgtcatg |
45270581 |
T |
|
| Q |
252 |
ggtgcatcatacgtt |
266 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45270582 |
ggtgcatcatacgtt |
45270596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 16868489 - 16868609
Alignment:
| Q |
147 |
ttccgattttgcaggaaaaccagtgattgttgatgctgataaagttacaacacttgaaagagcaagatctttcaaaacatgtaatccatcctttg-tgtt |
245 |
Q |
| |
|
|||| |||||| |||||||| ||||||| || |||||| ||||||||||| ||||||||||||| ||||||||||| | | ||||||||||||| |||| |
|
|
| T |
16868489 |
ttccaattttgtaggaaaacaagtgattactgctgctgaaaaagttacaactcttgaaagagcaaaatctttcaaaataagaaatccatcctttgttgtt |
16868588 |
T |
|
| Q |
246 |
gtcatgggtgcatcatacgtt |
266 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
16868589 |
gtcatgcgtgcatcatacgtt |
16868609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 17606157 - 17606272
Alignment:
| Q |
152 |
attttgcaggaaaaccagtgattgttgatgctgataaagttacaacacttgaaagagcaagatctttcaaaacatgtaatccatcctttg-tgttgtcat |
250 |
Q |
| |
|
|||| |||||||||| ||||||| | |||| | ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
17606157 |
atttcgcaggaaaacaagtgattactactgctaagaaagttacaactcttgaaagagcacaatctttcaaaatatgtaatccatcctttgttgttgtcat |
17606256 |
T |
|
| Q |
251 |
gggtgcatcatacgtt |
266 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17606257 |
gggtgcatcatacgtt |
17606272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 16863774 - 16863851
Alignment:
| Q |
189 |
agttacaacacttgaaagagcaagatctttcaaaacatgtaatccatcctttg-tgttgtcatgggtgcatcatacgt |
265 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||||||| |||||||||| |||||||||| | ||||||||||| |
|
|
| T |
16863774 |
agttacagctcttgaaagagcacaatctttcaaaacatgtaacccatcctttgttgttgtcatgcgcgcatcatacgt |
16863851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 16873598 - 16873676
Alignment:
| Q |
189 |
agttacaacacttgaaagagcaagatctttcaaaacatgtaatccatcctttg-tgttgtcatgggtgcatcatacgtt |
266 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||| | ||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
16873598 |
agttacagctcttgaaagagcacaatctttcaaaacaagcaatccgtcctttgttgttgtcatgcgtgcatcatacgtt |
16873676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1340 times since January 2019
Visitors: 4117