View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0668_low_60 (Length: 250)
Name: NF0668_low_60
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0668_low_60 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 27624457 - 27624685
Alignment:
| Q |
18 |
tggacatcatcaatagaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggcttatatatagtattcaatttag |
117 |
Q |
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| T |
27624457 |
tggacatcctcaatagaagagaaaacaaattcataaaaacatcttcctaaagaaacaataccccatttacttaaaggcttatatatagtattcaatttag |
27624556 |
T |
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| Q |
118 |
cacgtaagtcttcaagtttcgagggagagtttccttcggacagaatcactatgcatctctacaatctacattcttgcaaagtcattccttttgatcacaa |
217 |
Q |
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| T |
27624557 |
cacgtaagtcttcaagttt----taagagtctccttcgggcagaatcactatgcatctctacaatctacattattgcaaactcattccttttgatcacaa |
27624652 |
T |
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| Q |
218 |
ttgtgcatcttttattttcaaagcatggccaaa |
250 |
Q |
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| T |
27624653 |
ttgtgcatcttttattttcaaagcagggccaaa |
27624685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 11494010 - 11494080
Alignment:
| Q |
27 |
tcaatagaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggctt |
97 |
Q |
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| T |
11494010 |
tcaatagaagaaaaaccaaattcatagaaacctcttcctaaagaaacaattccccgtttactcaaaggctt |
11494080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 36707480 - 36707375
Alignment:
| Q |
32 |
agaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggcttatatatagtattcaatttagcacgtaagtcttca |
131 |
Q |
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| T |
36707480 |
agaagaaaaaacaaattcatagaaacctcttcctaaagaagtaattccccatttacttaaaggcttccatagagtattcaacttagcacgcacgtcttca |
36707381 |
T |
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| Q |
132 |
agtttc |
137 |
Q |
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| T |
36707380 |
agtttc |
36707375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 23281478 - 23281586
Alignment:
| Q |
21 |
acatcatcaatagaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggcttatatatagtattcaatttagcac |
120 |
Q |
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| T |
23281478 |
acatcctcaacagaagaaaaaacaaattcatagaaacctcgtcctaaagaaacaattccccatttactcaaaggcttccagagagtattcaacttagcac |
23281577 |
T |
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| Q |
121 |
gtaagtctt |
129 |
Q |
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| T |
23281578 |
gcaagtctt |
23281586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 7628147 - 7628245
Alignment:
| Q |
21 |
acatcatcaatagaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggcttatatatagtattcaatttagca |
119 |
Q |
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| T |
7628147 |
acatcctcaacaaaagataaaacaaattcataaaaaccttttcctaaagaaacaattccccatttactcaaaggcttctagagagtattcaacttagca |
7628245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 26302911 - 26302807
Alignment:
| Q |
32 |
agaagagaaaacaaattcataaaaacatcttcctaaagaagcaataccccatttacctaaaggcttatatatagtattcaatttagcacgtaagtcttca |
131 |
Q |
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| T |
26302911 |
agaagaaaaaacaaattcatagaagcctcttcctaaagaaacaattccccatttactcaaagccttccagagagtattcaacttagcacaaaagtcttca |
26302812 |
T |
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| Q |
132 |
agttt |
136 |
Q |
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||||| |
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| T |
26302811 |
agttt |
26302807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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