View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0668_low_67 (Length: 211)

Name: NF0668_low_67
Description: NF0668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0668_low_67
NF0668_low_67
[»] chr5 (2 HSPs)
chr5 (86-182)||(37337687-37337783)
chr5 (90-182)||(11300389-11300481)
[»] chr6 (1 HSPs)
chr6 (86-182)||(15296509-15296605)
[»] chr4 (1 HSPs)
chr4 (92-182)||(47968302-47968392)
[»] chr1 (1 HSPs)
chr1 (91-182)||(44508976-44509067)
[»] chr8 (1 HSPs)
chr8 (101-160)||(23828780-23828839)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 37337687 - 37337783
Alignment:
Q  86 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  37337687 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacatgtatataac 37337783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 11300481 - 11300389
Alignment:
Q  90 tgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 182  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||| |||||||||| ||||||||||    
T  11300481 tgagaaaatcaaaacttcacctccctatttcaagcatggccgattgttctctcactgcattgctctcctaccattgcctcacgggtatataac 11300389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 15296509 - 15296605
Alignment:
Q  86 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 182  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  15296509 atcatgagaaaatcaaaacttcacctccctatttcaagcatgttcgatcgtcctctcactgcatcgctctcctaccattgcctcacaggtatataac 15296605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 47968392 - 47968302
Alignment:
Q  92 agaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 182  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  47968392 agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcggtgcattgctctcctaccattgcctcacaggtatataac 47968302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 44508976 - 44509067
Alignment:
Q  91 gagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 182  Q
    ||||| || |||||||||||||||| | |||||||||| |||||||||||||| ||| |||||||||||| |||||||||||| ||||||||    
T  44508976 gagaacataaaaacttcacctccctgtatcaagcatggccgatcgtcctctcactgctttgctctcctaccattgcctcacagatatataac 44509067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 23828780 - 23828839
Alignment:
Q  101 aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctac 160  Q
    |||||| || |||||||||||||||||| | ||||||||| ||  |||||||||||||||    
T  23828780 aaacttaacttccctatttcaagcatggccaatcgtcctcccaccgcattgctctcctac 23828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 960 times since January 2019
Visitors: 4105